Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NL415_RS08545 Genome accession   NZ_CP117016
Coordinates   1587509..1588246 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MLI121     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582509..1593246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL415_RS08530 (NL415_008530) clpC 1582963..1585536 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  NL415_RS08535 (NL415_008535) yfiH 1585666..1586397 (-) 732 WP_000040165.1 purine nucleoside phosphorylase YfiH -
  NL415_RS08540 (NL415_008540) rluD 1586394..1587374 (-) 981 WP_000079109.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NL415_RS08545 (NL415_008545) comL 1587509..1588246 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  NL415_RS08550 (NL415_008550) raiA 1588517..1588858 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  NL415_RS08555 (NL415_008555) pheL 1588962..1589009 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  NL415_RS08560 (NL415_008560) pheA 1589109..1590269 (+) 1161 WP_000200110.1 bifunctional chorismate mutase/prephenate dehydratase -
  NL415_RS08565 (NL415_008565) tyrA 1590313..1591434 (-) 1122 WP_000225222.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  NL415_RS08570 (NL415_008570) aroF 1591445..1592515 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  NL415_RS08575 (NL415_008575) yfiL 1592724..1593089 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=716156 NL415_RS08545 WP_000197686.1 1587509..1588246(+) (comL) [Escherichia coli strain MLI121]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=716156 NL415_RS08545 WP_000197686.1 1587509..1588246(+) (comL) [Escherichia coli strain MLI121]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTAGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376