Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NL414_RS07005 Genome accession   NZ_CP117013
Coordinates   1354258..1354995 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MLI114     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1349258..1359995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL414_RS06975 (NL414_006975) yfiL 1349415..1349780 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  NL414_RS06980 (NL414_006980) aroF 1349989..1351059 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  NL414_RS06985 (NL414_006985) tyrA 1351070..1352191 (+) 1122 WP_000225222.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  NL414_RS06990 (NL414_006990) pheA 1352235..1353395 (-) 1161 WP_000200110.1 bifunctional chorismate mutase/prephenate dehydratase -
  NL414_RS06995 (NL414_006995) pheL 1353495..1353542 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  NL414_RS07000 (NL414_007000) raiA 1353646..1353987 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  NL414_RS07005 (NL414_007005) comL 1354258..1354995 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  NL414_RS07010 (NL414_007010) rluD 1355130..1356110 (+) 981 WP_000079109.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NL414_RS07015 (NL414_007015) yfiH 1356107..1356838 (+) 732 WP_000040165.1 purine nucleoside phosphorylase YfiH -
  NL414_RS07020 (NL414_007020) clpC 1356968..1359541 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=716079 NL414_RS07005 WP_000197686.1 1354258..1354995(-) (comL) [Escherichia coli strain MLI114]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=716079 NL414_RS07005 WP_000197686.1 1354258..1354995(-) (comL) [Escherichia coli strain MLI114]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTAGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376