Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   K6K39_RS19130 Genome accession   NZ_AP024135
Coordinates   4290991..4292400 (-) Length   469 a.a.
NCBI ID   WP_059251646.1    Uniprot ID   A0ABN3BQQ8
Organism   Streptomyces sp. EAS-AB2608 strain NBRC 114648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4285991..4297400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K39_RS19105 (EASAB2608_03915) - 4286263..4286859 (-) 597 WP_059251638.1 hypothetical protein -
  K6K39_RS19110 (EASAB2608_03916) - 4286901..4287440 (-) 540 WP_055703482.1 SigE family RNA polymerase sigma factor -
  K6K39_RS19115 (EASAB2608_03917) - 4287716..4288591 (-) 876 WP_059251641.1 A/G-specific adenine glycosylase -
  K6K39_RS19120 (EASAB2608_03918) - 4288771..4289598 (+) 828 WP_208639868.1 hypothetical protein -
  K6K39_RS19125 (EASAB2608_03919) disA 4289786..4290910 (-) 1125 WP_059251644.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  K6K39_RS19130 (EASAB2608_03920) radA/sms 4290991..4292400 (-) 1410 WP_059251646.1 DNA repair protein RadA Machinery gene
  K6K39_RS19135 (EASAB2608_03921) - 4292620..4294524 (+) 1905 WP_221334656.1 BACON domain-containing protein -
  K6K39_RS19140 (EASAB2608_03922) - 4295056..4295889 (-) 834 WP_059251650.1 hypothetical protein -
  K6K39_RS19145 (EASAB2608_03923) - 4295961..4296893 (+) 933 WP_059251652.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49717.95 Da        Isoelectric Point: 8.2605

>NTDB_id=71602 K6K39_RS19130 WP_059251646.1 4290991..4292400(-) (radA/sms) [Streptomyces sp. EAS-AB2608 strain NBRC 114648]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASAEHRTLYVTGEESASQVRLRADRIGALHDELYLAAETDLSAVL
GHLDEVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPPGMKVLEVADMGDALRVLPRSRRREAPREAEQRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=71602 K6K39_RS19130 WP_059251646.1 4290991..4292400(-) (radA/sms) [Streptomyces sp. EAS-AB2608 strain NBRC 114648]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGGACCACGGCACCGGGCC
GCGTGACCAGCTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCACGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTCGTGCCCGGCGCGGTCGTCCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTGGCCGCCAAGTCGGCCAGCGCCGAGCACCGCACCCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCGGCGCCCTCCACGACGAGCTGTACCTGGCCGCCGAGACCGACCTGTCCGCCGTCCTG
GGGCACCTGGACGAGGTCAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGGTCGCCTCCCCGGAGATCGAGGGCGC
GCCCGGCGGCATGGCCCAGGTCCGGGAGGTGGCGGGGGCGCTGATCCGGGCGTCGAAGGAGCGGGGCATGTCCACGCTGC
TCGTGGGCCACGTCACGAAGGACGGCGCCATCGCCGGCCCCCGCCTGCTGGAGCACCTGGTGGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCCCGCCTGCGCCTGGTGCGCGGCGTGAAGAACCGCTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGATCCCAGCGGCCTGTTCCTGACCCGCCGCGCCGAGCCGGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGGCCGCTGGTGGCCGAGGTACAGGCACTGACCGTCGACTCCCAGATC
CCCTCCCCGCGCCGTACGACCTCCGGACTGGAGACCTCGCGCGTGTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGGGTGAAGCTGTCGGAGCCGGCCGCCGACCTCG
CCATCGCGCTCGCCCTGGCCTCCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCACCGGCTGGGCTTCACGCACGCGCTCGT
ACCGGCCGATCCGGGGAAGGTGCCGCCCGGCATGAAGGTCCTGGAAGTCGCGGACATGGGGGACGCGCTCCGGGTTCTGC
CGCGCTCCCGTCGCCGAGAGGCCCCACGGGAGGCGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.027

96.375

0.424
  radA Streptococcus mitis SK321

42.984

95.736

0.412
  radA Streptococcus mitis NCTC 12261

42.984

95.736

0.412
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407

Multiple sequence alignment