Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   URS_RS17235 Genome accession   NZ_AP018824
Coordinates   1431742..1432602 (-) Length   286 a.a.
NCBI ID   WP_004991676.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain M3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1426742..1437602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URS_RS06870 (URS_1404) recN 1426836..1428497 (-) 1662 WP_004991683.1 DNA repair protein RecN -
  URS_RS06875 (URS_1405) - 1429005..1429331 (+) 327 WP_004991681.1 pyrimidine/purine nucleoside phosphorylase -
  URS_RS06880 (URS_1406) rlmB 1429451..1430200 (+) 750 WP_004991679.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  URS_RS06885 (URS_1407) - 1430241..1431164 (+) 924 WP_004991678.1 DMT family transporter -
  URS_RS06890 (URS_1408) coaE 1431146..1431739 (-) 594 WP_004991677.1 dephospho-CoA kinase -
  URS_RS17235 (URS_1409) pilD 1431742..1432602 (-) 861 WP_004991676.1 A24 family peptidase Machinery gene
  URS_RS06900 (URS_1410) pilC 1432602..1433828 (-) 1227 WP_004991675.1 type II secretion system F family protein Machinery gene
  URS_RS06905 (URS_1411) pilB 1433859..1435580 (-) 1722 WP_004991672.1 type IV-A pilus assembly ATPase PilB Machinery gene
  URS_RS06910 (URS_1412) tpiA 1435931..1436728 (+) 798 WP_004991671.1 triose-phosphate isomerase -
  URS_RS06915 (URS_1413) secG 1436738..1437067 (+) 330 WP_004991669.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32133.59 Da        Isoelectric Point: 7.8325

>NTDB_id=71595 URS_RS17235 WP_004991676.1 1431742..1432602(-) (pilD) [Acinetobacter ursingii strain M3]
MSEILNYFIQTPTALYLAVGIFSLCIGSFLNVVIYRTPKMMEQDWHTECQMLLHPDQAIIDQDKLTLSSPPSTCPKCHSR
IRWYQNIPLLSWLFLKGKCGHCQNPISIRYPLIELLTMLCSLMIVAVFGPSFQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGVNSYSLYVSPTAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=71595 URS_RS17235 WP_004991676.1 1431742..1432602(-) (pilD) [Acinetobacter ursingii strain M3]
ATGTCCGAAATTCTTAATTATTTTATCCAAACCCCAACTGCGCTTTATCTTGCAGTTGGGATTTTTAGCTTGTGCATTGG
TAGTTTTTTAAATGTTGTGATTTATCGCACGCCAAAAATGATGGAACAGGACTGGCACACTGAGTGCCAGATGTTGTTAC
ATCCTGATCAAGCGATCATTGATCAAGATAAACTGACATTAAGTTCACCACCTTCAACCTGCCCCAAATGCCATAGCCGT
ATTCGTTGGTATCAAAATATTCCATTGCTCAGTTGGCTATTTTTAAAAGGTAAATGTGGCCATTGTCAAAATCCGATTAG
CATCCGTTATCCTTTGATTGAACTGCTCACGATGCTATGTTCACTGATGATCGTGGCTGTCTTTGGCCCGAGCTTTCAAA
TGCTGTTTGGTCTGGTTTTAACTTGGGTGCTTATTGCCCTCACGTTTATTGATTTTGATACTCAACTGTTGCCCGATCGT
TTTACTCTGCCGCTAGCAGCATTAGGTCTAGGGGTTAATAGCTATAGTCTTTATGTCTCACCAACCGCCGCGATTTGGGG
CTATCTGATTGGTTTTTTATGCCTGTGGATTGTCTATTATTTATTTAAAATCATTACAGGTAAAGAAGGGATGGGCTATG
GCGATTTTAAGTTACTTGCTGCTCTCGGCGCATGGATGGGACCTTTGATGCTTCCACTGATTGTGCTACTTTCTTCACTG
GTCGGTGCGATTATAGGGATTATTTTACTCAAAATTCGTAAAGAAAATCAGCCATTTGCCTTTGGCCCTTATATCGCCAT
TGCTGGATGGATCGCCTTTTTATGGGGTGAGCAAATTATGAAAGTTTATCTGGGAGGCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

82.517

100

0.825
  pilD Acinetobacter baumannii D1279779

81.469

100

0.815
  pilD Vibrio cholerae strain A1552

55.056

93.357

0.514
  pilD Vibrio campbellii strain DS40M4

51.228

99.65

0.51
  pilD Neisseria gonorrhoeae MS11

45.421

95.455

0.434

Multiple sequence alignment