Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   K6K39_RS16555 Genome accession   NZ_AP024135
Coordinates   3745828..3746949 (-) Length   373 a.a.
NCBI ID   WP_059250043.1    Uniprot ID   A0ABS9JE89
Organism   Streptomyces sp. EAS-AB2608 strain NBRC 114648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3740828..3751949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K39_RS16545 (EASAB2608_03393) gyrB 3742860..3744926 (-) 2067 WP_221334557.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  K6K39_RS16550 (EASAB2608_03394) - 3745301..3745831 (-) 531 WP_059250044.1 DUF721 domain-containing protein -
  K6K39_RS16555 (EASAB2608_03395) recF 3745828..3746949 (-) 1122 WP_059250043.1 DNA replication/repair protein RecF Machinery gene
  K6K39_RS16560 (EASAB2608_03396) gnd 3746998..3747873 (-) 876 WP_059250042.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  K6K39_RS16565 (EASAB2608_03397) dnaN 3748075..3749205 (-) 1131 WP_059250041.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40805.55 Da        Isoelectric Point: 7.6036

>NTDB_id=71595 K6K39_RS16555 WP_059250043.1 3745828..3746949(-) (recF) [Streptomyces sp. EAS-AB2608 strain NBRC 114648]
MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPLVRMGAERAVIRAQVRQGDRQ
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKTAALARRHGGRSMDLSTLDVWDQHLARAGAELLAQRMDLIAALQPLADKAYEQLAPGGGPVTLEYRPSAPGEAH
TREELYAQLMAALTEVRKQEIERGVTLVGPHRDDLLLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLILD
DVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPQVLAGARYAVAGGTVERV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=71595 K6K39_RS16555 WP_059250043.1 3745828..3746949(-) (recF) [Streptomyces sp. EAS-AB2608 strain NBRC 114648]
ATGCACGTCACGCATCTTTCGCTGGCCGACTTCCGCTCGTACGCCCGGGCCGAGGTCCCGCTCGACCCGGGCGTCACCGC
CTTCGTCGGCCCCAACGGGCAGGGCAAGACCAACCTCGTGGAGGCGGTCGGGTATCTGGCGACCCTCGGCAGCCACCGGG
TCGCCTCCGACGCGCCCCTGGTGCGCATGGGCGCCGAGCGGGCGGTGATCCGGGCGCAGGTCCGGCAGGGCGACCGGCAG
CAGCTGATCGAACTGGAGCTGAACCCGGGCCGGGCCAACCGCGCCCGCATCAACCGGTCCTCGCAGGTCAGGCCGCGGGA
CGTGCTGGGGATCGTCCGGACCGTGCTGTTCGCGCCCGAGGATCTCGCCCTCGTCAAGGGGGACCCGGGCGAGCGGCGGC
GGTTCCTGGACGAGCTGATCACCGCGCGGTCCCCGCGGATGGCGGGCGTGCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGACGGCCGCGCTGGCCCGCCGGCACGGCGGGCGGTCCATGGACCTGTCCACCCTGGACGTGTG
GGATCAGCATCTCGCGCGCGCGGGGGCGGAGCTGCTCGCCCAGCGGATGGATCTCATCGCGGCGCTGCAGCCGCTCGCCG
ACAAGGCGTACGAACAGCTGGCTCCGGGCGGCGGTCCGGTGACGCTGGAGTACAGGCCGTCGGCGCCGGGCGAGGCGCAC
ACGCGCGAGGAGCTGTACGCCCAGCTGATGGCGGCCCTGACCGAGGTGCGGAAGCAGGAGATCGAGCGGGGTGTCACCCT
CGTCGGACCGCACCGGGACGATCTGCTGCTCAAGCTCGGTCAGCTGCCCGCCAAGGGGTACGCCTCGCACGGGGAGTCCT
GGTCGTACGCCCTCGCGCTGCGGCTGGCCTCGTACGACCTGCTGCGTGCCGAGGGCAACGAGCCGGTGCTGATCCTGGAC
GACGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTCGCGCCCGGCGAGCAGGTGCTGGTCAC
CGCCGCCGTGGACGACGACGTACCGCAGGTGCTGGCCGGCGCCCGGTACGCGGTGGCCGGCGGGACGGTGGAACGCGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.983

94.906

0.37

Multiple sequence alignment