Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQ504_RS00040 Genome accession   NZ_CP102284
Coordinates   9498..10043 (+) Length   181 a.a.
NCBI ID   WP_003697615.1    Uniprot ID   E7FSB0
Organism   Ligilactobacillus ruminis strain ATCC 25644     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4498..15043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ504_RS00030 (NQ504_00030) gyrA 6390..8933 (+) 2544 WP_003697613.1 DNA gyrase subunit A -
  NQ504_RS00035 (NQ504_00035) rpsF 9170..9460 (+) 291 WP_003695891.1 30S ribosomal protein S6 -
  NQ504_RS00040 (NQ504_00040) ssb 9498..10043 (+) 546 WP_003697615.1 single-stranded DNA-binding protein Machinery gene
  NQ504_RS00045 (NQ504_00045) rpsR 10064..10300 (+) 237 WP_003695889.1 30S ribosomal protein S18 -
  NQ504_RS00050 (NQ504_00050) - 11421..11723 (+) 303 WP_259960046.1 hypothetical protein -
  NQ504_RS00055 (NQ504_00055) - 11827..12828 (-) 1002 WP_003697628.1 DUF1002 domain-containing protein -
  NQ504_RS00060 (NQ504_00060) pnuC 13093..13854 (+) 762 WP_003697629.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19803.35 Da        Isoelectric Point: 4.9497

>NTDB_id=715853 NQ504_RS00040 WP_003697615.1 9498..10043(+) (ssb) [Ligilactobacillus ruminis strain ATCC 25644]
MINRVVLVGRLTRDPDLRYTNSGTSVASFTVAVDRNFTNQQGNREADFINCVVWGKSAENFANFTHKGSLVGIEGRIQTR
SYENQQGNRVYVTEVVTENFSLLESKAESDRYRAQHGGSASSAPRQQSQSSFGGNPYGAPANNQGSYQQDNGYGNVNNDA
MQDPFAGNGSKTDVSEDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=715853 NQ504_RS00040 WP_003697615.1 9498..10043(+) (ssb) [Ligilactobacillus ruminis strain ATCC 25644]
ATGATCAATAGAGTTGTTTTGGTTGGTCGTTTGACCAGAGACCCTGATTTGCGCTACACGAATTCAGGTACTTCAGTGGC
CAGTTTCACTGTTGCCGTCGATCGAAACTTCACTAACCAACAAGGTAATCGTGAAGCAGATTTTATCAATTGTGTAGTAT
GGGGCAAATCCGCAGAGAATTTTGCCAACTTCACTCATAAGGGTTCGCTTGTCGGAATTGAAGGACGCATTCAAACGCGT
TCTTACGAAAATCAGCAAGGGAATCGCGTATATGTGACTGAAGTCGTTACGGAAAACTTCTCGTTGCTCGAATCCAAGGC
AGAATCTGATCGTTACCGCGCACAGCACGGTGGTTCGGCATCATCTGCTCCTCGTCAACAGAGTCAGTCTTCGTTCGGCG
GAAATCCGTACGGAGCTCCTGCCAACAATCAGGGCAGTTATCAGCAAGATAACGGCTATGGCAACGTGAATAACGATGCC
ATGCAGGATCCGTTTGCCGGCAACGGCTCCAAGACGGACGTTTCGGAAGACGACTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7FSB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.011

100

0.58
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.591

100

0.536