Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NQ540_RS02140 Genome accession   NZ_CP102283
Coordinates   400294..402078 (+) Length   594 a.a.
NCBI ID   WP_039849211.1    Uniprot ID   -
Organism   Granulicatella adiacens ATCC 49175     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 395294..407078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ540_RS02125 (NQ540_02125) acpP 395760..396002 (+) 243 WP_039849213.1 acyl carrier protein -
  NQ540_RS02130 (NQ540_02130) - 396260..398053 (+) 1794 WP_005607328.1 oligopeptide ABC transporter substrate-binding protein -
  NQ540_RS02135 (NQ540_02135) oppA 398298..400097 (+) 1800 WP_039849212.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQ540_RS02140 (NQ540_02140) oppA 400294..402078 (+) 1785 WP_039849211.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQ540_RS02145 (NQ540_02145) - 402389..403390 (+) 1002 WP_005607318.1 ABC transporter ATP-binding protein -
  NQ540_RS02150 (NQ540_02150) - 403390..404334 (+) 945 WP_005607315.1 ABC transporter ATP-binding protein -
  NQ540_RS02155 (NQ540_02155) opp4B 404337..405299 (+) 963 WP_039849210.1 oligopeptide ABC transporter permease -
  NQ540_RS02160 (NQ540_02160) - 405318..406238 (+) 921 WP_005607310.1 ABC transporter permease -
  NQ540_RS02165 (NQ540_02165) - 406398..406853 (+) 456 WP_005607308.1 hypothetical protein -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 65961.59 Da        Isoelectric Point: 4.6426

>NTDB_id=715837 NQ540_RS02140 WP_039849211.1 400294..402078(+) (oppA) [Granulicatella adiacens ATCC 49175]
MNKKKMMILFSATTALTLAACGGNNSSSSTTSTEAGTAKTKYASEVTHEGTPIKGGTLKYAIVSSSPFSGIFADELSQVT
TDSTIGGLIDESMFEYDENRKLTNTGLASIKFDVENKTATVTLNSKEYKWSDGQPVTIDDYIFAYQAIGNKDYTGVRYDG
DFKNVVGMEDYHNGKADSVSGLEKVDDYTVKIHFKEMSPSMQLAGGSVSAYIMPKHIFKDIPEAEWEQSDYVRSKKFVGL
GQFKIDSIVAGESVTLVPNEHYYKGVAKVDKVVMEVVSPDNIVSEMKAGNYDIATMPNAQYEAYKDLTNVTFLSSQESAY
EYIGFHLGKYDNAAGKNVTDPNAKMSDANLRQAMAYALDVEAAGQNLYNGLQHASNSIIIPFFKDVYNKDQEGFTYNPEK
AKQLLDEAGYKDVDGDGLRENKDGSKLKITFAARTRDEANESLVQQYLNWWKEIGLDVQLYTGRTIELNSFYDKIQADDP
EIDVFAAGWSTGYDPNPEGLFGETAKFNFERYVDPEGNAIMKKISSTEAFDSAKNIEFYKEWQKYVHDKAFIFPTLVGES
ITAVNKRVKYFDVNLGSQKSALYQIELTSDTAAK

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=715837 NQ540_RS02140 WP_039849211.1 400294..402078(+) (oppA) [Granulicatella adiacens ATCC 49175]
ATGAACAAGAAAAAAATGATGATTTTGTTTTCTGCAACGACAGCTTTAACTTTAGCTGCTTGTGGCGGAAATAATAGTAG
TTCGTCGACAACAAGTACTGAAGCCGGTACAGCCAAAACGAAGTATGCATCAGAAGTCACTCATGAAGGCACGCCGATTA
AAGGTGGCACATTAAAATATGCTATCGTATCTTCATCACCGTTTTCTGGGATTTTTGCAGATGAGTTGTCTCAAGTCACT
ACTGATTCAACTATCGGGGGTCTTATAGATGAAAGCATGTTTGAATATGATGAGAACCGTAAATTAACCAATACGGGTCT
AGCAAGTATTAAATTTGATGTTGAGAATAAAACAGCAACGGTCACTTTAAATTCAAAAGAGTATAAATGGTCTGATGGCC
AACCAGTGACAATCGATGACTATATTTTCGCTTATCAAGCCATCGGAAATAAAGACTATACAGGTGTTCGTTACGACGGT
GATTTTAAAAATGTCGTTGGGATGGAAGACTATCACAATGGAAAAGCAGATAGTGTTTCAGGTCTTGAAAAAGTGGATGA
TTACACGGTGAAAATTCACTTCAAAGAAATGAGCCCTTCAATGCAATTAGCCGGTGGTTCTGTTTCTGCTTATATTATGC
CGAAACATATCTTCAAAGACATTCCTGAAGCGGAGTGGGAACAAAGTGATTACGTTCGTAGTAAAAAATTCGTTGGTCTT
GGACAATTCAAAATTGATTCTATTGTAGCCGGTGAATCTGTAACACTCGTTCCAAATGAACACTATTATAAAGGTGTAGC
AAAAGTTGATAAAGTCGTAATGGAAGTCGTTTCACCAGATAATATCGTGTCAGAAATGAAAGCTGGGAATTACGATATCG
CGACAATGCCAAACGCGCAATATGAAGCTTATAAAGATTTAACAAATGTGACTTTCTTAAGTTCACAAGAATCAGCCTAT
GAATATATCGGTTTCCACTTAGGAAAATATGATAATGCTGCAGGTAAAAATGTAACAGATCCAAATGCAAAAATGAGTGA
TGCAAACCTACGTCAAGCGATGGCGTATGCACTAGATGTTGAAGCAGCGGGTCAAAACTTGTATAACGGATTACAACATG
CCTCAAATTCTATTATCATTCCGTTCTTTAAAGATGTTTATAATAAAGACCAAGAAGGATTTACTTACAATCCTGAAAAA
GCGAAACAATTATTGGATGAAGCAGGATATAAAGATGTGGATGGAGATGGACTTCGTGAAAACAAAGACGGTTCTAAGTT
GAAAATTACTTTTGCCGCTCGTACACGTGACGAAGCCAACGAATCATTAGTACAACAATACTTAAACTGGTGGAAAGAAA
TCGGGTTAGACGTTCAACTGTACACAGGACGTACGATTGAATTGAACTCATTCTATGATAAAATCCAAGCGGATGATCCA
GAAATCGATGTGTTTGCAGCAGGATGGTCAACAGGTTACGATCCAAACCCAGAAGGATTGTTTGGGGAAACAGCGAAATT
TAACTTCGAACGTTATGTAGATCCAGAAGGAAATGCAATCATGAAGAAAATCAGTTCAACAGAAGCCTTTGACTCAGCGA
AAAACATTGAGTTCTACAAAGAATGGCAAAAATACGTTCATGATAAAGCGTTTATCTTCCCAACGTTAGTCGGAGAATCG
ATTACTGCTGTTAACAAACGTGTGAAATACTTCGATGTTAACTTAGGTAGTCAAAAATCAGCTCTATATCAAATCGAATT
AACGAGTGATACAGCAGCGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(115-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

55.259

100

0.557