Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NQ540_RS02135 Genome accession   NZ_CP102283
Coordinates   398298..400097 (+) Length   599 a.a.
NCBI ID   WP_039849212.1    Uniprot ID   -
Organism   Granulicatella adiacens ATCC 49175     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 393298..405097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ540_RS02115 (NQ540_02115) - 393647..394693 (+) 1047 WP_005607334.1 ABC transporter ATP-binding protein -
  NQ540_RS02120 (NQ540_02120) - 394686..395579 (+) 894 WP_005607332.1 ABC transporter ATP-binding protein -
  NQ540_RS02125 (NQ540_02125) acpP 395760..396002 (+) 243 WP_039849213.1 acyl carrier protein -
  NQ540_RS02130 (NQ540_02130) - 396260..398053 (+) 1794 WP_005607328.1 oligopeptide ABC transporter substrate-binding protein -
  NQ540_RS02135 (NQ540_02135) oppA 398298..400097 (+) 1800 WP_039849212.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQ540_RS02140 (NQ540_02140) oppA 400294..402078 (+) 1785 WP_039849211.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQ540_RS02145 (NQ540_02145) - 402389..403390 (+) 1002 WP_005607318.1 ABC transporter ATP-binding protein -
  NQ540_RS02150 (NQ540_02150) - 403390..404334 (+) 945 WP_005607315.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 66187.10 Da        Isoelectric Point: 4.9548

>NTDB_id=715836 NQ540_RS02135 WP_039849212.1 398298..400097(+) (oppA) [Granulicatella adiacens ATCC 49175]
MKKKSLLFLSAAAAALTLAACGNANNGNSGNTSSEPAKASSKSKFNAEVTHEGTAIKGGTLKYALVAASPFSGIFIDELS
TNTTDSSIASQVDQSMFEYDENRKLTNTGLASLKLDVEGKTATVTLNAKDYKWSDGQPFTIDDYIFAIEAIGNKDYTGSR
YNDRYQNIVGMKDFHEGKSDKISGVEKVDDYTVKIHFEKMLPSMQLAGGAIPAYTMPKHVFKDIPVKDWEQSEYVRGTKV
VGLGPFTIESIVPGESVTLKANENFYKGRPKVDKMVMQVVSPDSIVSEMKAGNYDIASMPSAQYEAFKDLTNVTFLSSFA
PSYEYISFKLGTFDKSQGKNVTNPKAKMSDPALRQAIGYALDIDSAGENLYHGLNYGTNSIILPFFKDVYNKEQEGFTYN
PEKAKQLLDEAGYKDVDGDGIRENKDGSKLTINFAARTRDAANESLIQQYLIWWKEVGLDVQLYTGRTIESNNFYVKIQA
DDPEIDMFAGGWGTGYDPNPSNLFGETAKFNFSRYVNEKGTEIMKKISSTDAFDDAKNKEFYKEWQAYAKDEAFMIPTLV
GDSVTAVNKRVKYYDTSIATSGSKSQVYQIELTSEDGAK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=715836 NQ540_RS02135 WP_039849212.1 398298..400097(+) (oppA) [Granulicatella adiacens ATCC 49175]
ATGAAAAAGAAGAGCTTATTATTCTTATCAGCTGCAGCGGCAGCACTAACATTAGCAGCATGTGGGAATGCTAATAATGG
AAATAGTGGAAACACTTCATCTGAACCAGCAAAAGCAAGTTCAAAATCAAAATTTAATGCAGAAGTTACTCATGAAGGAA
CTGCAATTAAAGGCGGAACATTAAAATACGCTTTAGTAGCGGCTTCACCATTCAGTGGTATTTTCATTGATGAATTATCA
ACAAACACTACTGACTCATCGATTGCAAGTCAAGTAGACCAATCAATGTTTGAATATGATGAAAACCGTAAGTTAACGAA
TACAGGTTTAGCTTCATTAAAATTAGACGTTGAAGGAAAAACAGCGACTGTCACTTTAAATGCGAAAGACTATAAATGGT
CAGATGGACAACCATTCACAATCGATGACTATATCTTCGCTATCGAAGCTATCGGTAACAAAGACTACACTGGTTCTCGT
TACAACGACCGTTACCAAAACATTGTCGGAATGAAAGACTTCCACGAAGGCAAATCAGATAAGATTTCTGGTGTGGAAAA
AGTGGATGATTATACAGTGAAAATTCACTTTGAAAAAATGTTACCTTCTATGCAATTAGCAGGTGGAGCGATTCCAGCAT
ACACAATGCCAAAACATGTCTTCAAAGATATTCCAGTTAAAGATTGGGAACAAAGTGAATATGTACGCGGTACAAAAGTA
GTCGGCTTAGGACCGTTCACAATTGAATCAATCGTGCCAGGGGAATCTGTAACCTTAAAAGCAAATGAAAACTTCTATAA
AGGTCGTCCTAAAGTAGATAAAATGGTGATGCAAGTAGTTTCTCCAGACTCAATCGTTTCAGAAATGAAAGCTGGAAACT
ACGATATCGCAAGCATGCCAAGTGCTCAATATGAAGCATTCAAAGATTTAACAAACGTAACATTCTTAAGTTCATTTGCG
CCTTCTTATGAATACATTTCATTCAAATTAGGAACATTTGATAAATCACAAGGTAAAAACGTAACGAATCCAAAAGCGAA
AATGAGCGATCCTGCTCTTCGTCAAGCAATCGGTTATGCATTAGATATCGATTCAGCTGGAGAAAACTTATATCACGGAT
TGAACTATGGTACAAACTCTATCATCTTACCATTCTTCAAAGATGTATATAACAAAGAGCAAGAAGGATTTACTTATAAC
CCAGAGAAAGCGAAACAATTATTAGATGAAGCTGGTTATAAAGATGTTGATGGTGACGGAATCCGTGAAAATAAAGACGG
TTCTAAGTTAACGATTAACTTTGCTGCTCGTACTCGTGACGCAGCGAATGAATCATTAATCCAACAATACTTAATTTGGT
GGAAAGAAGTTGGTTTAGATGTACAACTTTATACAGGGCGTACAATTGAATCAAATAACTTCTACGTTAAAATTCAAGCA
GATGATCCAGAAATCGATATGTTCGCTGGTGGTTGGGGAACAGGTTATGATCCAAACCCATCTAACTTGTTTGGTGAAAC
AGCTAAATTTAACTTCTCTCGTTATGTAAATGAAAAAGGTACTGAAATCATGAAGAAAATTTCTTCAACAGACGCTTTTG
ACGATGCGAAAAATAAAGAGTTCTACAAAGAATGGCAAGCATATGCTAAAGATGAAGCTTTCATGATTCCAACTTTAGTA
GGGGACAGTGTAACTGCTGTAAATAAACGTGTGAAATATTATGACACTTCAATTGCAACAAGTGGTTCTAAATCTCAAGT
TTACCAAATCGAATTGACTTCTGAAGATGGAGCAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(114-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

53.654

100

0.539