Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NQ540_RS00090 | Genome accession | NZ_CP102283 |
| Coordinates | 25014..25511 (+) | Length | 165 a.a. |
| NCBI ID | WP_005608180.1 | Uniprot ID | - |
| Organism | Granulicatella adiacens ATCC 49175 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 25014..74969 | 25014..25511 | within | 0 |
Gene organization within MGE regions
Location: 25014..74969
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQ540_RS00090 (NQ540_00090) | ssb | 25014..25511 (+) | 498 | WP_005608180.1 | single-stranded DNA-binding protein | Machinery gene |
| NQ540_RS00095 (NQ540_00095) | rpsR | 25534..25776 (+) | 243 | WP_005608178.1 | 30S ribosomal protein S18 | - |
| NQ540_RS00100 (NQ540_00100) | - | 26030..28057 (+) | 2028 | WP_005608177.1 | DHH family phosphoesterase | - |
| NQ540_RS00105 (NQ540_00105) | rplI | 28073..28525 (+) | 453 | WP_005608175.1 | 50S ribosomal protein L9 | - |
| NQ540_RS00110 (NQ540_00110) | dnaB | 28712..30097 (+) | 1386 | WP_005608173.1 | replicative DNA helicase | - |
| NQ540_RS00115 (NQ540_00115) | - | 30130..31419 (+) | 1290 | WP_005608172.1 | adenylosuccinate synthase | - |
| NQ540_RS00120 (NQ540_00120) | yycF | 31447..32163 (+) | 717 | WP_005608170.1 | response regulator YycF | - |
| NQ540_RS00125 (NQ540_00125) | walK | 32246..34102 (+) | 1857 | WP_005608168.1 | cell wall metabolism sensor histidine kinase WalK | - |
| NQ540_RS00130 (NQ540_00130) | - | 34092..35444 (+) | 1353 | WP_005608166.1 | YycH family regulatory protein | - |
| NQ540_RS00135 (NQ540_00135) | - | 35434..36297 (+) | 864 | WP_005608164.1 | two-component system regulatory protein YycI | - |
| NQ540_RS00140 (NQ540_00140) | - | 36310..37113 (+) | 804 | WP_005608162.1 | MBL fold metallo-hydrolase | - |
| NQ540_RS00145 (NQ540_00145) | - | 37221..38456 (+) | 1236 | WP_005608160.1 | S1C family serine protease | - |
| NQ540_RS00150 (NQ540_00150) | rlmH | 38972..39451 (+) | 480 | WP_005608158.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| NQ540_RS00155 (NQ540_00155) | - | 39607..40788 (-) | 1182 | WP_005608156.1 | tyrosine-type recombinase/integrase | - |
| NQ540_RS00160 (NQ540_00160) | - | 40904..41578 (-) | 675 | WP_005608154.1 | NYN domain-containing protein | - |
| NQ540_RS00165 (NQ540_00165) | - | 41746..42156 (-) | 411 | WP_005608152.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NQ540_RS00170 (NQ540_00170) | - | 42355..42600 (-) | 246 | Protein_33 | helix-turn-helix domain-containing protein | - |
| NQ540_RS00175 (NQ540_00175) | - | 42772..42963 (+) | 192 | WP_005608146.1 | helix-turn-helix transcriptional regulator | - |
| NQ540_RS00180 (NQ540_00180) | - | 43138..43302 (-) | 165 | WP_083789029.1 | YjzC family protein | - |
| NQ540_RS00185 (NQ540_00185) | - | 43390..43692 (+) | 303 | WP_005608142.1 | hypothetical protein | - |
| NQ540_RS00190 (NQ540_00190) | - | 43696..43989 (-) | 294 | WP_005608140.1 | hypothetical protein | - |
| NQ540_RS00195 (NQ540_00195) | - | 44045..44320 (+) | 276 | WP_005608138.1 | hypothetical protein | - |
| NQ540_RS00200 (NQ540_00200) | - | 44317..44595 (+) | 279 | WP_005608136.1 | hypothetical protein | - |
| NQ540_RS00205 (NQ540_00205) | - | 44812..45054 (+) | 243 | WP_005608133.1 | hypothetical protein | - |
| NQ540_RS00210 (NQ540_00210) | - | 45076..45864 (+) | 789 | WP_005608132.1 | conserved phage C-terminal domain-containing protein | - |
| NQ540_RS00215 (NQ540_00215) | - | 45866..47122 (+) | 1257 | WP_005608131.1 | replicative DNA helicase | - |
| NQ540_RS00220 (NQ540_00220) | - | 47119..47493 (+) | 375 | WP_005608130.1 | hypothetical protein | - |
| NQ540_RS00225 (NQ540_00225) | - | 47477..47965 (+) | 489 | WP_005608129.1 | hypothetical protein | - |
| NQ540_RS00230 (NQ540_00230) | - | 47962..48297 (+) | 336 | WP_005608128.1 | MazG-like family protein | - |
| NQ540_RS00235 (NQ540_00235) | - | 48297..48566 (+) | 270 | WP_005608127.1 | DUF3310 domain-containing protein | - |
| NQ540_RS00240 (NQ540_00240) | - | 48569..48808 (+) | 240 | WP_005608125.1 | hypothetical protein | - |
| NQ540_RS00245 (NQ540_00245) | - | 48792..49340 (+) | 549 | WP_005608123.1 | hypothetical protein | - |
| NQ540_RS00250 (NQ540_00250) | - | 49341..49673 (+) | 333 | WP_005608121.1 | hypothetical protein | - |
| NQ540_RS00255 (NQ540_00255) | - | 49823..50035 (+) | 213 | WP_005608119.1 | hypothetical protein | - |
| NQ540_RS00260 (NQ540_00260) | - | 50037..50273 (+) | 237 | WP_005608117.1 | hypothetical protein | - |
| NQ540_RS00265 (NQ540_00265) | - | 50274..50477 (+) | 204 | WP_005608115.1 | hypothetical protein | - |
| NQ540_RS00270 (NQ540_00270) | - | 50479..50775 (+) | 297 | WP_005608114.1 | hypothetical protein | - |
| NQ540_RS00275 (NQ540_00275) | nrdH | 50967..51203 (+) | 237 | WP_005608112.1 | glutaredoxin-like protein NrdH | - |
| NQ540_RS00280 (NQ540_00280) | - | 51203..51535 (+) | 333 | WP_005608110.1 | hypothetical protein | - |
| NQ540_RS00285 (NQ540_00285) | ssb | 51532..51933 (+) | 402 | WP_005608108.1 | single-stranded DNA-binding protein | Machinery gene |
| NQ540_RS00290 (NQ540_00290) | - | 51953..52414 (+) | 462 | WP_050755113.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| NQ540_RS00295 (NQ540_00295) | - | 52646..53188 (+) | 543 | WP_005608105.1 | site-specific integrase | - |
| NQ540_RS00300 (NQ540_00300) | - | 53341..53658 (+) | 318 | WP_005608102.1 | HNH endonuclease | - |
| NQ540_RS00305 (NQ540_00305) | - | 53764..54132 (+) | 369 | WP_005608099.1 | P27 family phage terminase small subunit | - |
| NQ540_RS00310 (NQ540_00310) | - | 54129..55880 (+) | 1752 | WP_005608097.1 | terminase large subunit | - |
| NQ540_RS00315 (NQ540_00315) | - | 55882..57081 (+) | 1200 | WP_005608094.1 | phage portal protein | - |
| NQ540_RS00320 (NQ540_00320) | - | 57074..57649 (+) | 576 | WP_050755115.1 | HK97 family phage prohead protease | - |
| NQ540_RS00325 (NQ540_00325) | - | 57639..57974 (+) | 336 | WP_005608086.1 | hypothetical protein | - |
| NQ540_RS00330 (NQ540_00330) | - | 57950..58804 (+) | 855 | WP_327050066.1 | phage major capsid protein | - |
| NQ540_RS00335 (NQ540_00335) | - | 58817..59113 (+) | 297 | WP_050755112.1 | hypothetical protein | - |
| NQ540_RS00340 (NQ540_00340) | - | 59013..59363 (+) | 351 | WP_211204711.1 | hypothetical protein | - |
| NQ540_RS00345 (NQ540_00345) | - | 59353..59670 (+) | 318 | WP_005608082.1 | phage head closure protein | - |
| NQ540_RS00350 (NQ540_00350) | - | 59660..60013 (+) | 354 | WP_050755111.1 | HK97 gp10 family phage protein | - |
| NQ540_RS00355 (NQ540_00355) | - | 60059..60334 (+) | 276 | WP_259912550.1 | hypothetical protein | - |
| NQ540_RS00360 (NQ540_00360) | - | 60349..60942 (+) | 594 | WP_005608079.1 | major tail protein | - |
| NQ540_RS00365 (NQ540_00365) | - | 60955..61347 (+) | 393 | WP_005608078.1 | hypothetical protein | - |
| NQ540_RS00370 (NQ540_00370) | - | 61569..64460 (+) | 2892 | WP_005608077.1 | phage tail tape measure protein | - |
| NQ540_RS00375 (NQ540_00375) | - | 64457..65212 (+) | 756 | WP_005608076.1 | phage distal tail protein | - |
| NQ540_RS00380 (NQ540_00380) | - | 65209..67290 (+) | 2082 | WP_039849309.1 | phage tail spike protein | - |
| NQ540_RS00385 (NQ540_00385) | - | 67283..69322 (+) | 2040 | WP_005608074.1 | DUF859 family phage minor structural protein | - |
| NQ540_RS00390 (NQ540_00390) | - | 69335..69550 (+) | 216 | WP_005608073.1 | hypothetical protein | - |
| NQ540_RS00395 (NQ540_00395) | - | 69554..69979 (+) | 426 | WP_005608071.1 | phage holin family protein | - |
| NQ540_RS00400 (NQ540_00400) | - | 69985..70242 (+) | 258 | WP_039849314.1 | phage holin | - |
| NQ540_RS00405 (NQ540_00405) | - | 70306..71286 (+) | 981 | WP_039849308.1 | N-acetylmuramoyl-L-alanine amidase family protein | - |
| NQ540_RS00410 (NQ540_00410) | - | 71695..71889 (+) | 195 | WP_005608064.1 | hypothetical protein | - |
| NQ540_RS00420 (NQ540_00420) | - | 72652..72990 (+) | 339 | WP_005608062.1 | hypothetical protein | - |
| NQ540_RS00425 (NQ540_00425) | - | 73051..74154 (-) | 1104 | WP_005608060.1 | ABC transporter ATP-binding protein | - |
| NQ540_RS00430 (NQ540_00430) | - | 74406..74969 (+) | 564 | WP_005608058.1 | dUTP diphosphatase | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18529.26 Da Isoelectric Point: 4.7187
>NTDB_id=715825 NQ540_RS00090 WP_005608180.1 25014..25511(+) (ssb) [Granulicatella adiacens ATCC 49175]
MINNVVLVGRLTRAVDLRYTSNGTAYASFSIAIDRRYQNQNGERETDFINCVMWRKAAENFANFTRKGSLVGIEGRIQTR
SYDNQQGQKVYVTEVLAENFSLLESRNVTEQRPANDQSSQGGFQQNQSNNFNQFNTPTSSFGGGMSDPFLSNGETINISD
DDLPF
MINNVVLVGRLTRAVDLRYTSNGTAYASFSIAIDRRYQNQNGERETDFINCVMWRKAAENFANFTRKGSLVGIEGRIQTR
SYDNQQGQKVYVTEVLAENFSLLESRNVTEQRPANDQSSQGGFQQNQSNNFNQFNTPTSSFGGGMSDPFLSNGETINISD
DDLPF
Nucleotide
Download Length: 498 bp
>NTDB_id=715825 NQ540_RS00090 WP_005608180.1 25014..25511(+) (ssb) [Granulicatella adiacens ATCC 49175]
ATGATTAATAATGTTGTATTAGTTGGACGCTTAACACGTGCCGTTGATTTACGTTATACTTCAAACGGAACTGCTTATGC
GAGCTTCTCTATCGCAATTGATCGTCGTTACCAAAACCAAAACGGTGAACGTGAAACAGACTTTATCAACTGCGTAATGT
GGCGTAAAGCTGCAGAAAACTTTGCGAATTTCACTCGTAAAGGCTCACTAGTAGGAATTGAAGGACGTATTCAAACTCGT
AGCTATGATAACCAACAAGGCCAAAAAGTTTATGTGACTGAAGTGCTAGCTGAGAACTTCTCATTGTTAGAATCACGTAA
TGTTACTGAACAACGCCCTGCAAACGATCAAAGCTCACAAGGTGGATTCCAACAAAACCAATCAAATAACTTTAATCAAT
TTAACACTCCTACTTCATCATTTGGTGGTGGAATGTCAGATCCATTCTTAAGTAATGGAGAGACAATCAACATTTCAGAT
GATGATTTACCATTCTAA
ATGATTAATAATGTTGTATTAGTTGGACGCTTAACACGTGCCGTTGATTTACGTTATACTTCAAACGGAACTGCTTATGC
GAGCTTCTCTATCGCAATTGATCGTCGTTACCAAAACCAAAACGGTGAACGTGAAACAGACTTTATCAACTGCGTAATGT
GGCGTAAAGCTGCAGAAAACTTTGCGAATTTCACTCGTAAAGGCTCACTAGTAGGAATTGAAGGACGTATTCAAACTCGT
AGCTATGATAACCAACAAGGCCAAAAAGTTTATGTGACTGAAGTGCTAGCTGAGAACTTCTCATTGTTAGAATCACGTAA
TGTTACTGAACAACGCCCTGCAAACGATCAAAGCTCACAAGGTGGATTCCAACAAAACCAATCAAATAACTTTAATCAAT
TTAACACTCCTACTTCATCATTTGGTGGTGGAATGTCAGATCCATTCTTAAGTAATGGAGAGACAATCAACATTTCAGAT
GATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.209 |
100 |
0.648 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
100 |
0.552 |