Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NL408_RS09195 Genome accession   NZ_CP116987
Coordinates   1906205..1906861 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain MLI107     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901205..1911861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL408_RS09165 (NL408_009165) dcyD 1902085..1903071 (+) 987 WP_206311384.1 D-cysteine desulfhydrase -
  NL408_RS09170 (NL408_009170) tcyL 1903086..1903754 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  NL408_RS09175 (NL408_009175) tcyN 1903751..1904503 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  NL408_RS09180 (NL408_009180) sdiA 1904733..1905455 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  NL408_RS09185 (NL408_009185) yecF 1905522..1905746 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  NL408_RS09190 (NL408_009190) yecU 1905733..1905909 (-) 177 WP_000590347.1 protein YecU -
  NL408_RS23210 - 1905992..1906063 (-) 72 Protein_1795 transcriptional regulator -
  NL408_RS09195 (NL408_009195) letA 1906205..1906861 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  NL408_RS09200 (NL408_009200) uvrC 1906858..1908690 (+) 1833 WP_206311383.1 excinuclease ABC subunit UvrC Machinery gene
  NL408_RS09205 (NL408_009205) pgsA 1908747..1909295 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NL408_RS09225 (NL408_009225) yecA 1909945..1910610 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=715601 NL408_RS09195 WP_000611335.1 1906205..1906861(+) (letA) [Escherichia coli strain MLI107]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=715601 NL408_RS09195 WP_000611335.1 1906205..1906861(+) (letA) [Escherichia coli strain MLI107]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486