Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   URS_RS02575 Genome accession   NZ_AP018824
Coordinates   543286..544167 (-) Length   293 a.a.
NCBI ID   WP_034698958.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain M3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 538286..549167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URS_RS02560 (URS_0528) miaB 540129..541580 (+) 1452 WP_034698964.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  URS_RS02565 (URS_0529) - 541621..542703 (+) 1083 WP_004985450.1 PhoH family protein -
  URS_RS02570 (URS_0530) ybeY 542782..543261 (+) 480 WP_034698961.1 rRNA maturation RNase YbeY -
  URS_RS02575 (URS_0531) tonB2 543286..544167 (-) 882 WP_034698958.1 energy transducer TonB Machinery gene
  URS_RS02580 (URS_0532) - 544406..545101 (+) 696 WP_126624132.1 hypothetical protein -
  URS_RS02585 (URS_0533) - 545257..545973 (+) 717 WP_005002073.1 DUF3108 domain-containing protein -
  URS_RS02590 (URS_0534) - 546060..546635 (+) 576 WP_004985432.1 xanthine phosphoribosyltransferase -
  URS_RS02595 (URS_0535) - 546830..547204 (+) 375 WP_004995062.1 hypothetical protein -
  URS_RS02600 (URS_0536) wrbA 547388..547978 (-) 591 WP_126624133.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33234.86 Da        Isoelectric Point: 9.6666

>NTDB_id=71559 URS_RS02575 WP_034698958.1 543286..544167(-) (tonB2) [Acinetobacter ursingii strain M3]
MFKKNVGYFPVIRHWWQDSILLAAIAIAIVLHIFVLLIHFAMPAPSDTATKEIAVSIRPSTDPVEHADFLAQANQKGSGK
FHDSHRMSSDMPKAMPDQSSGESATQTLDHIQQQRELKFEEKVLMTVLSWQKQAEENQRKKAQDDLQSQFQAKAAMVASI
EAQYLQRQQNFSRQQRIKTVDGIQAKQDASAAYLNKFREKVELYGNRYYPDEAKQQNLAGEVRLMVVLNAQGGIRAIRLI
ESSGHPILDEAAKASVRRGAPFGRFDTGMKDISELRIIRTWKFNPAQAEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=71559 URS_RS02575 WP_034698958.1 543286..544167(-) (tonB2) [Acinetobacter ursingii strain M3]
ATGTTTAAAAAAAATGTAGGTTATTTTCCAGTGATTCGACACTGGTGGCAGGATTCTATTTTATTGGCTGCAATTGCGAT
TGCAATCGTGCTGCATATTTTCGTTTTGCTGATTCATTTCGCCATGCCTGCGCCATCGGATACTGCGACCAAAGAAATTG
CGGTATCGATCCGTCCAAGTACTGATCCGGTTGAGCATGCCGACTTTTTAGCACAGGCAAATCAAAAAGGATCTGGAAAA
TTCCATGATTCACACCGTATGTCGAGCGATATGCCCAAAGCCATGCCTGATCAAAGCTCAGGCGAATCTGCAACACAAAC
CCTTGATCATATTCAGCAACAACGTGAGCTAAAATTTGAAGAAAAAGTGCTGATGACGGTATTAAGCTGGCAAAAACAGG
CCGAAGAAAACCAGCGAAAAAAAGCACAGGATGATTTACAAAGCCAGTTTCAAGCTAAAGCAGCCATGGTCGCGAGCATT
GAGGCGCAATATTTACAGCGTCAGCAGAACTTTAGCCGACAGCAACGGATTAAAACCGTAGATGGTATTCAAGCCAAGCA
AGATGCATCAGCAGCCTATTTAAATAAATTTCGTGAAAAAGTGGAACTTTATGGCAACCGTTATTATCCAGATGAAGCCA
AACAACAAAATTTAGCAGGTGAAGTTCGACTCATGGTGGTGCTGAATGCACAAGGCGGCATTCGTGCGATTCGTTTAATC
GAGAGTTCTGGACATCCAATACTGGATGAGGCTGCCAAAGCATCGGTACGCCGTGGTGCACCGTTTGGTCGTTTTGATAC
AGGAATGAAGGATATTTCCGAATTACGGATTATCCGAACATGGAAATTTAACCCAGCTCAGGCCGAGTTTGAAGTGCATT
AG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

77.211

100

0.775

Multiple sequence alignment