Detailed information NTG0071556

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FFK26_RS23030
• Genome accession: NZ_AP024130
• Coordinates: 4824653..4825678 (+)
• Length: 341 a.a.
• NCBI ID: WP_137564497.1
• Uniprot ID: -
• Organism: Escherichia coli strain SI-NP020
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4819653..4830678

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FFK26_RS23020 (BvCmsSINP020_4564)	rpmE	4821884..4822096 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
FFK26_RS23025 (BvCmsSINP020_4565)	priA	4822299..4824497 (+)	2199	WP_001368117.1	primosomal protein N'	Machinery gene
FFK26_RS23030 (BvCmsSINP020_4566)	cytR	4824653..4825678 (+)	1026	WP_137564497.1	DNA-binding transcriptional regulator CytR	Regulator
FFK26_RS23035 (BvCmsSINP020_4567)	ftsN	4825770..4826729 (+)	960	WP_000068834.1	cell division protein FtsN	-
FFK26_RS23040 (BvCmsSINP020_4568)	hslV	4826822..4827352 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
FFK26_RS23045 (BvCmsSINP020_4569)	hslU	4827362..4828693 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
FFK26_RS23050 (BvCmsSINP020_4570)	menA	4828760..4829686 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
FFK26_RS23055 (BvCmsSINP020_4571)	rraA	4829779..4830264 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
FFK26_RS23060 (BvCmsSINP020_4572)	zapB	4830349..4830594 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37835.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=71556 FFK26_RS23030 WP_137564497.1 4824653..4825678(+) (cytR) [Escherichia coli strain SI-NP020]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGRESMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=71556 FFK26_RS23030 WP_137564497.1 4824653..4825678(+) (cytR) [Escherichia coli strain SI-NP020]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAATCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625