Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PQP10_RS09035 Genome accession   NZ_CP116976
Coordinates   1854691..1855428 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CUVM53     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1849691..1860428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQP10_RS09020 (PQP10_09020) clpC 1850145..1852718 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  PQP10_RS09025 (PQP10_09025) yfiH 1852848..1853579 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  PQP10_RS09030 (PQP10_09030) rluD 1853576..1854556 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PQP10_RS09035 (PQP10_09035) comL 1854691..1855428 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PQP10_RS09040 (PQP10_09040) raiA 1855699..1856040 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PQP10_RS09045 (PQP10_09045) pheL 1856144..1856191 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PQP10_RS09050 (PQP10_09050) pheA 1856289..1857449 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  PQP10_RS09055 (PQP10_09055) tyrA 1857492..1858613 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PQP10_RS09060 (PQP10_09060) aroF 1858624..1859694 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PQP10_RS09065 (PQP10_09065) yfiL 1859904..1860269 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=715432 PQP10_RS09035 WP_000197686.1 1854691..1855428(+) (comL) [Escherichia coli strain CUVM53]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=715432 PQP10_RS09035 WP_000197686.1 1854691..1855428(+) (comL) [Escherichia coli strain CUVM53]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376