Detailed information
Bioinformatically predicted
Overview
| Name | comL | Type | Machinery gene |
| Locus tag | DLM_RS09465 | Genome accession | NZ_AP018823 |
| Coordinates | 1975759..1976550 (-) | Length | 263 a.a. |
| NCBI ID | WP_089083307.1 | Uniprot ID | - |
| Organism | Aquitalea magnusonii strain H3 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1970759..1981550
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLM_RS09455 (DLM_1877) | purL | 1971226..1975185 (-) | 3960 | WP_089083308.1 | phosphoribosylformylglycinamidine synthase | - |
| DLM_RS09460 (DLM_1878) | - | 1975333..1975671 (+) | 339 | WP_045846995.1 | P-II family nitrogen regulator | - |
| DLM_RS09465 (DLM_1879) | comL | 1975759..1976550 (-) | 792 | WP_089083307.1 | outer membrane protein assembly factor BamD | Machinery gene |
| DLM_RS09470 (DLM_1880) | rluD | 1976549..1977652 (+) | 1104 | WP_089083306.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| DLM_RS09475 (DLM_1881) | pgeF | 1977639..1978394 (+) | 756 | WP_089083305.1 | peptidoglycan editing factor PgeF | - |
Sequence
Protein
Download Length: 263 a.a. Molecular weight: 30245.35 Da Isoelectric Point: 7.9427
>NTDB_id=71539 DLM_RS09465 WP_089083307.1 1975759..1976550(-) (comL) [Aquitalea magnusonii strain H3]
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEARDELNSGNYTRAVKLYETLEARYPYGRYAQQAEMDLAYTHYK
DNEPELAVAAADRFIKLHPAHPNVDYVYYLKGLVYYNDDQGMLSKWAGQDMSERDPKAARESFLAFRELTTRFPNSKYSA
DALQKMNRLVDALGGSEMHVARYYMKRGAYLAAANRAQNVVKEYSNTKYPEEALALMSVAYDKLGMAQLASDAKRVLALN
YPKSAYLTQPWQVEEMPWWKVWK
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEARDELNSGNYTRAVKLYETLEARYPYGRYAQQAEMDLAYTHYK
DNEPELAVAAADRFIKLHPAHPNVDYVYYLKGLVYYNDDQGMLSKWAGQDMSERDPKAARESFLAFRELTTRFPNSKYSA
DALQKMNRLVDALGGSEMHVARYYMKRGAYLAAANRAQNVVKEYSNTKYPEEALALMSVAYDKLGMAQLASDAKRVLALN
YPKSAYLTQPWQVEEMPWWKVWK
Nucleotide
Download Length: 792 bp
>NTDB_id=71539 DLM_RS09465 WP_089083307.1 1975759..1976550(-) (comL) [Aquitalea magnusonii strain H3]
ATGAAAAGATACGTTGTAGCAGCAATGTTGGTGATGGGGCTTGCCGGTTGTGCAACCACGGAAACCTACGACGAAACGCG
CGGCTGGACCGTGGAAAAGCTCTACTCGGAAGCTCGGGATGAACTGAACAGCGGTAATTATACCCGTGCTGTCAAGCTGT
ACGAAACGCTGGAAGCGCGCTACCCTTATGGCCGCTATGCCCAGCAGGCCGAAATGGACTTGGCCTATACGCATTACAAG
GATAATGAACCGGAACTGGCCGTGGCCGCTGCCGACCGCTTCATCAAGCTGCATCCGGCCCACCCGAATGTGGACTACGT
GTACTACCTGAAGGGTTTGGTCTACTACAACGACGATCAGGGCATGTTGTCCAAGTGGGCTGGTCAGGACATGAGTGAAC
GTGACCCGAAAGCGGCGCGCGAATCCTTCCTGGCCTTCCGCGAACTGACCACCCGCTTCCCCAACAGCAAGTATAGTGCG
GATGCGCTGCAAAAGATGAACCGTCTGGTGGATGCACTGGGCGGCAGCGAAATGCATGTGGCACGCTACTACATGAAGCG
TGGCGCTTACCTGGCAGCGGCCAACCGCGCGCAGAACGTGGTGAAGGAATACTCCAATACCAAGTATCCGGAAGAAGCAT
TGGCGCTGATGTCGGTGGCCTACGACAAGCTGGGTATGGCGCAACTGGCAAGCGATGCCAAGCGCGTGCTGGCGCTGAAC
TACCCCAAGAGTGCTTATCTGACCCAGCCGTGGCAGGTGGAAGAAATGCCGTGGTGGAAGGTGTGGAAATAA
ATGAAAAGATACGTTGTAGCAGCAATGTTGGTGATGGGGCTTGCCGGTTGTGCAACCACGGAAACCTACGACGAAACGCG
CGGCTGGACCGTGGAAAAGCTCTACTCGGAAGCTCGGGATGAACTGAACAGCGGTAATTATACCCGTGCTGTCAAGCTGT
ACGAAACGCTGGAAGCGCGCTACCCTTATGGCCGCTATGCCCAGCAGGCCGAAATGGACTTGGCCTATACGCATTACAAG
GATAATGAACCGGAACTGGCCGTGGCCGCTGCCGACCGCTTCATCAAGCTGCATCCGGCCCACCCGAATGTGGACTACGT
GTACTACCTGAAGGGTTTGGTCTACTACAACGACGATCAGGGCATGTTGTCCAAGTGGGCTGGTCAGGACATGAGTGAAC
GTGACCCGAAAGCGGCGCGCGAATCCTTCCTGGCCTTCCGCGAACTGACCACCCGCTTCCCCAACAGCAAGTATAGTGCG
GATGCGCTGCAAAAGATGAACCGTCTGGTGGATGCACTGGGCGGCAGCGAAATGCATGTGGCACGCTACTACATGAAGCG
TGGCGCTTACCTGGCAGCGGCCAACCGCGCGCAGAACGTGGTGAAGGAATACTCCAATACCAAGTATCCGGAAGAAGCAT
TGGCGCTGATGTCGGTGGCCTACGACAAGCTGGGTATGGCGCAACTGGCAAGCGATGCCAAGCGCGTGCTGGCGCTGAAC
TACCCCAAGAGTGCTTATCTGACCCAGCCGTGGCAGGTGGAAGAAATGCCGTGGTGGAAGGTGTGGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comL | Neisseria meningitidis MC58 |
58.647 |
100 |
0.593 |
| comL | Neisseria gonorrhoeae MS11 |
57.895 |
100 |
0.586 |