Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   M0P28_RS11310 Genome accession   NZ_CP116958
Coordinates   2220254..2220952 (+) Length   232 a.a.
NCBI ID   WP_117479849.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP074     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2215254..2225952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS11290 (M0P28_11290) - 2216251..2217441 (-) 1191 WP_012962562.1 argininosuccinate synthase -
  M0P28_RS11295 (M0P28_11295) - 2217706..2218431 (-) 726 WP_172473468.1 ABC transporter permease -
  M0P28_RS11300 (M0P28_11300) - 2218431..2219174 (-) 744 WP_117479851.1 ABC transporter permease -
  M0P28_RS11305 (M0P28_11305) - 2219176..2220084 (-) 909 WP_048791051.1 ABC transporter ATP-binding protein -
  M0P28_RS11310 (M0P28_11310) scnR 2220254..2220952 (+) 699 WP_117479849.1 response regulator transcription factor Regulator
  M0P28_RS11315 (M0P28_11315) - 2220962..2222311 (+) 1350 WP_048791049.1 sensor histidine kinase -
  M0P28_RS11320 (M0P28_11320) - 2222358..2223524 (-) 1167 WP_048791048.1 CynX/NimT family MFS transporter -
  M0P28_RS11325 (M0P28_11325) gltX 2223697..2225154 (-) 1458 WP_041974164.1 glutamate--tRNA ligase -
  M0P28_RS11330 (M0P28_11330) - 2225339..2225833 (-) 495 WP_013852291.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26305.40 Da        Isoelectric Point: 5.7190

>NTDB_id=715314 M0P28_RS11310 WP_117479849.1 2220254..2220952(+) (scnR) [Streptococcus pasteurianus strain WUSP074]
MDFEASLLKKRILIVDDDYSLNTSIKEVLKNAGFQHISCAYSISNSVDLLSMNNIDLIILDIMLPDGEGYSLAKDVRKHS
DIPILFLTAKNNPEDEINGLKASGDDYVTKPFLPQVLIYRIMTLLRRAYKGDTELIELDNCTIHLTNALVQKGNVELSLT
PTEIQIIKKLYANKNYIVSTESICDSVWKGENFGYEKSLMVHIRNIREKIEDNPSKPQYIVTVKGLGYKFVL

Nucleotide


Download         Length: 699 bp        

>NTDB_id=715314 M0P28_RS11310 WP_117479849.1 2220254..2220952(+) (scnR) [Streptococcus pasteurianus strain WUSP074]
ATGGACTTTGAAGCATCGCTTCTAAAAAAGAGGATTTTAATTGTTGATGATGACTACTCGCTCAATACTTCTATTAAAGA
GGTATTGAAAAATGCAGGTTTTCAACATATTAGCTGTGCTTACAGTATTAGCAACAGCGTTGATTTGCTGTCGATGAATA
ATATCGATTTAATCATTTTAGATATCATGCTCCCTGACGGCGAAGGCTATTCATTAGCCAAAGACGTTAGAAAACACTCT
GATATTCCTATATTATTTTTAACGGCTAAAAACAATCCTGAAGATGAAATTAATGGTTTAAAAGCTAGCGGAGATGACTA
CGTTACTAAGCCATTTTTGCCCCAAGTACTCATTTATCGTATTATGACCTTGCTAAGACGTGCTTACAAAGGCGATACCG
AACTGATTGAATTGGACAACTGTACGATACATTTAACGAATGCTCTTGTTCAGAAGGGAAATGTCGAACTTTCACTAACT
CCTACCGAGATTCAAATTATCAAAAAATTATACGCCAATAAAAATTATATTGTCTCAACAGAATCAATTTGCGATAGTGT
TTGGAAAGGCGAAAATTTTGGATACGAAAAATCACTTATGGTGCATATTCGCAATATCCGTGAAAAAATCGAAGATAATC
CTTCTAAACCCCAGTATATTGTTACCGTTAAAGGTTTAGGCTATAAGTTTGTATTGTAG

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-230)

Response regulator receiver domain (Response_reg)

(12-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.793

95.69

0.409
  vicR Streptococcus mutans UA159

36.681

98.707

0.362