Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   M0P28_RS11075 Genome accession   NZ_CP116958
Coordinates   2180575..2181882 (-) Length   435 a.a.
NCBI ID   WP_117480042.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP074     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2175575..2186882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS11040 (M0P28_11040) - 2175616..2175843 (-) 228 WP_003066551.1 hypothetical protein -
  M0P28_RS11045 (M0P28_11045) comD/comD3 2175975..2176289 (-) 315 WP_003066552.1 GHKL domain-containing protein Regulator
  M0P28_RS11050 (M0P28_11050) comE/comE2 2176691..2176912 (-) 222 WP_003066558.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  M0P28_RS11055 (M0P28_11055) - 2176884..2177246 (-) 363 WP_003066560.1 bacteriocin immunity protein -
  M0P28_RS11060 (M0P28_11060) - 2177803..2178114 (-) 312 WP_003066564.1 bacteriocin immunity protein -
  M0P28_RS11065 (M0P28_11065) - 2178976..2180136 (-) 1161 WP_117480154.1 IS110 family transposase -
  M0P28_RS11070 (M0P28_11070) - 2180416..2180553 (+) 138 WP_003066566.1 hypothetical protein -
  M0P28_RS11075 (M0P28_11075) comD/comD1 2180575..2181882 (-) 1308 WP_117480042.1 sensor histidine kinase Regulator
  M0P28_RS11080 (M0P28_11080) comE/comE1 2181890..2182621 (-) 732 WP_117480045.1 response regulator transcription factor Regulator
  M0P28_RS11085 (M0P28_11085) - 2182638..2182922 (-) 285 WP_003066573.1 LytTR family DNA-binding domain-containing protein -
  M0P28_RS11090 (M0P28_11090) - 2183619..2184632 (-) 1014 WP_003066577.1 hypothetical protein -
  M0P28_RS11095 (M0P28_11095) - 2184804..2185100 (-) 297 WP_003066579.1 bacteriocin immunity protein -
  M0P28_RS11100 (M0P28_11100) - 2185100..2185318 (-) 219 WP_003066580.1 Blp family class II bacteriocin -
  M0P28_RS12200 (M0P28_11105) - 2185511..2185630 (-) 120 WP_253066439.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  M0P28_RS11110 (M0P28_11110) - 2185627..2185974 (-) 348 WP_003066582.1 CPBP family intramembrane glutamic endopeptidase -
  M0P28_RS11115 (M0P28_11115) - 2186004..2186183 (-) 180 WP_003066584.1 hypothetical protein -
  M0P28_RS11120 (M0P28_11120) - 2186354..2186665 (-) 312 WP_248488375.1 hypothetical protein -

Sequence

Protein


Download         Length: 435 a.a.        Molecular weight: 51182.84 Da        Isoelectric Point: 6.2648

>NTDB_id=715310 M0P28_RS11075 WP_117480042.1 2180575..2181882(-) (comD/comD1) [Streptococcus pasteurianus strain WUSP074]
MSDYLSELAYYPVIMLIYSNVRGEKLKLWEIVTIAVAFFVIDFTWFYTIIGRILILMFLSYLRDKTLPFSLYVFYGSIPW
VIESAFKRIISFFIIPFFNFSYTDLDKNNLLFVIVEFSIILMYFMMVQLFKINFQTFIALSEIKNLRKKLIFTDLTMMFY
YVMIEFLTGMEVYGGVPNLVYRQWLVVLYFTFFTLMLFYMNRSYQNWLEKEVSLAREQELHSLSVYSKQIEGLYAELRAF
RHDYANILASLKEGIDQNDMSMVRNIYNAVLEDSGKFIQHSRFNIGRLTNIDNDAIKSLLSAEFLEAESHHIEVELEVKD
KIGTPDIPLLDYVRLVSILCDNVIEAAIEAEKPAMIIACFYQGDDYLLIIDNTTKEERVPVELIYQKNYSSKGFGRGVGL
KTVNQMLKKYPNMSVQTSSKNYHFRQTIRIKKSFD

Nucleotide


Download         Length: 1308 bp        

>NTDB_id=715310 M0P28_RS11075 WP_117480042.1 2180575..2181882(-) (comD/comD1) [Streptococcus pasteurianus strain WUSP074]
ATGAGTGATTATCTAAGTGAACTAGCTTACTATCCTGTGATTATGTTGATTTACTCTAATGTTAGAGGAGAAAAACTGAA
ATTGTGGGAAATAGTAACGATAGCTGTTGCTTTCTTCGTCATTGATTTTACATGGTTTTACACTATTATCGGTCGTATTT
TAATATTGATGTTTCTATCTTATTTGAGAGATAAAACCTTGCCCTTTTCTCTATACGTATTTTATGGGAGTATTCCATGG
GTTATAGAGAGTGCTTTTAAAAGAATTATTAGTTTCTTCATTATTCCATTTTTTAATTTTAGTTATACCGATTTAGATAA
AAATAATTTATTATTTGTCATTGTAGAATTTTCAATAATTCTGATGTATTTTATGATGGTGCAGTTGTTTAAAATTAACT
TTCAAACTTTTATTGCACTAAGTGAGATAAAAAATCTACGAAAGAAACTAATATTTACAGATTTAACAATGATGTTTTAC
TATGTCATGATTGAATTTTTAACAGGTATGGAAGTTTATGGTGGTGTCCCAAACTTGGTTTATCGCCAATGGTTGGTGGT
TCTCTATTTCACTTTCTTCACTTTAATGTTGTTTTATATGAATCGCTCTTATCAAAATTGGCTGGAGAAAGAAGTATCGT
TAGCGCGGGAGCAAGAACTGCATTCTTTGTCGGTATATAGCAAGCAAATCGAAGGCTTATATGCGGAACTAAGAGCTTTT
CGTCATGATTATGCTAATATCTTAGCGAGTTTAAAAGAGGGAATCGACCAAAATGATATGAGTATGGTGAGGAATATTTA
TAATGCCGTTTTAGAGGATTCTGGAAAGTTTATTCAGCATAGTCGCTTCAATATTGGACGATTGACTAATATTGATAATG
ATGCGATAAAAAGCCTTTTATCAGCTGAATTTTTAGAAGCGGAATCTCATCATATTGAGGTAGAATTAGAAGTTAAAGAT
AAAATTGGAACTCCAGATATTCCTTTGTTAGATTATGTGCGGCTCGTCTCCATTTTATGTGACAATGTGATTGAAGCGGC
TATTGAAGCTGAAAAGCCTGCCATGATTATTGCTTGTTTCTATCAAGGGGATGACTATTTACTAATTATAGATAACACCA
CAAAAGAAGAGCGAGTTCCTGTGGAATTGATTTACCAGAAGAATTATTCAAGTAAGGGCTTTGGACGAGGTGTTGGTCTT
AAAACGGTTAACCAGATGTTGAAAAAGTATCCAAATATGTCGGTACAAACATCAAGCAAGAATTATCATTTCAGACAAAC
AATACGAATCAAAAAATCATTCGACTGA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(330-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus equinus JB1

75.862

53.333

0.405