Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY40_RS24715 Genome accession   NZ_CP102179
Coordinates   5490066..5491655 (+) Length   529 a.a.
NCBI ID   WP_258648298.1    Uniprot ID   -
Organism   Pseudomonas alvandae strain B21-020     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5485066..5496655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY40_RS24695 (LOY40_24695) pgeF 5486868..5487593 (-) 726 WP_258648297.1 peptidoglycan editing factor PgeF -
  LOY40_RS24700 (LOY40_24700) rluD 5487590..5488552 (-) 963 WP_030140267.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY40_RS24705 (LOY40_24705) - 5488704..5489720 (+) 1017 WP_030140268.1 outer membrane protein assembly factor BamD -
  LOY40_RS24710 (LOY40_24710) - 5489843..5490076 (+) 234 WP_030140269.1 PP0621 family protein -
  LOY40_RS24715 (LOY40_24715) pilS 5490066..5491655 (+) 1590 WP_258648298.1 nitrogen regulation protein NR(II) Regulator
  LOY40_RS24720 (LOY40_24720) pilR 5491652..5492998 (+) 1347 WP_030140271.1 sigma-54 dependent transcriptional regulator Regulator
  LOY40_RS24725 (LOY40_24725) - 5493394..5493531 (+) 138 WP_258648299.1 hypothetical protein -
  LOY40_RS24730 (LOY40_24730) thiO 5493736..5494836 (-) 1101 WP_198798122.1 glycine oxidase ThiO -
  LOY40_RS24735 (LOY40_24735) - 5494888..5495292 (-) 405 WP_258648300.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58604.41 Da        Isoelectric Point: 7.3361

>NTDB_id=715307 LOY40_RS24715 WP_258648298.1 5490066..5491655(+) (pilS) [Pseudomonas alvandae strain B21-020]
MSAEAPLPRVKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPAQLF
GLALTDVLLLSWLFFVAGGAPSAIGNLIIVSVAISNTLLRGRIGLLIAAVATLGIVGSTFVLGLSDSSRPSSYLQAGTLG
ALCFAAALLVQRLTRRLEASETLAEQKASEVLSLEALNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQRID
DYSSALVERLQGWLNNPSLRPQNLTISGTGLTLQPSFIALGAEDQQQILIFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTAPQRLDLRSCLEQFVRQARESAEGH
QQLHLSIDPGDYITLMDPDQLTQVLDNLLRNAWRHSALAHDKAEAWLKLFIDPHSQLATLDIIDNGPGVTPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=715307 LOY40_RS24715 WP_258648298.1 5490066..5491655(+) (pilS) [Pseudomonas alvandae strain B21-020]
GTGAGCGCTGAAGCCCCGCTCCCTCGCGTCAAACAGGCGCAGCGCCTGCTGCGTCTGTATCACCTGTACCGCCTCAGCAT
CGGCATCACCCTGGTGCTGCTGATTTCCAGCAACATGGATAACCGCCTGCTGGAGTTCGCCAACGACGATCTGCTGCGCA
GCGGCAGCTGGTTATACCTGGTACTGAACATCCTGCTGGTGGTGTTCCTGGAAAACACCCGTCGTCCTGCCCAGTTGTTC
GGCCTGGCCTTGACCGACGTCCTGTTGCTGTCGTGGCTGTTCTTCGTCGCGGGCGGCGCCCCCAGCGCCATTGGCAACCT
GATCATCGTCTCGGTGGCGATCAGCAATACCTTGCTGCGCGGCCGGATCGGCCTGTTGATCGCCGCCGTCGCCACCCTGG
GCATCGTTGGCTCGACGTTCGTGCTCGGTCTCAGCGATTCGAGCCGACCCAGCAGCTATCTGCAAGCAGGCACCCTGGGC
GCCCTGTGCTTCGCCGCCGCGTTGCTGGTGCAACGCCTGACCCGACGACTGGAAGCCAGCGAAACCCTGGCCGAGCAAAA
AGCCAGCGAAGTGCTCAGCCTCGAAGCCCTCAATGCGCTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTCCTGGATC
GCCAACGCCGGGTTCAGTTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCATGACCTGGTCGGCCAACGGATCGAC
GATTATTCCAGCGCCTTGGTCGAGCGATTGCAGGGGTGGTTGAACAACCCCAGCCTGCGCCCGCAAAACCTGACCATCAG
CGGCACGGGCCTGACCCTGCAACCCAGCTTCATCGCCCTCGGGGCAGAGGATCAGCAACAGATCCTGATATTTCTCGAAG
ACCTGGCCCAGGTGGCCCAACACGCCCAGCAATTGAAGCTGGCATCGTTGGGGCGTCTCACCGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGGGCAATCAGCCACGCCGCGCAATTGCTGCGCGAGTCCGAGGAACTGAACGACGCGGACCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATCGAAAACGTCCTGCAACTGTCCCGTCGCCAGC
AAACCGCCCCCCAACGCCTGGATCTGCGTAGCTGCCTCGAGCAATTCGTCCGGCAGGCCCGCGAAAGCGCGGAAGGACAC
CAACAACTGCACCTGAGCATCGACCCCGGCGACTACATCACGCTCATGGACCCCGACCAACTGACCCAAGTGCTCGACAA
CCTGTTGCGCAACGCCTGGCGCCACAGCGCGCTGGCCCATGACAAGGCCGAGGCCTGGTTGAAGCTGTTCATCGATCCCC
ATAGCCAACTGGCCACGCTGGACATCATCGACAACGGCCCTGGCGTAACGCCGGACCAGCAGGCGCACCTGTTCGAACCT
TTTTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGTTGCTTCCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.039

97.921

0.588