Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY40_RS08165 Genome accession   NZ_CP102179
Coordinates   1813641..1814276 (+) Length   211 a.a.
NCBI ID   WP_030137690.1    Uniprot ID   -
Organism   Pseudomonas alvandae strain B21-020     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1808641..1819276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY40_RS08145 (LOY40_08145) - 1808765..1809697 (+) 933 WP_249875662.1 ABC transporter ATP-binding protein -
  LOY40_RS08150 (LOY40_08150) - 1809694..1810473 (+) 780 WP_030137687.1 ABC transporter permease -
  LOY40_RS08155 (LOY40_08155) - 1810638..1811153 (-) 516 WP_030137688.1 DUF2062 domain-containing protein -
  LOY40_RS08160 (LOY40_08160) comA 1811298..1813544 (+) 2247 WP_258650005.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY40_RS08165 (LOY40_08165) exbB 1813641..1814276 (+) 636 WP_030137690.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY40_RS08170 (LOY40_08170) - 1814273..1814701 (+) 429 WP_249875658.1 biopolymer transporter ExbD -
  LOY40_RS08175 (LOY40_08175) lpxK 1814701..1815711 (+) 1011 WP_030137692.1 tetraacyldisaccharide 4'-kinase -
  LOY40_RS08180 (LOY40_08180) - 1815735..1815920 (+) 186 WP_003179363.1 Trm112 family protein -
  LOY40_RS08185 (LOY40_08185) kdsB 1815917..1816681 (+) 765 WP_030137693.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY40_RS08190 (LOY40_08190) - 1816681..1817145 (+) 465 WP_030137694.1 low molecular weight protein-tyrosine-phosphatase -
  LOY40_RS08195 (LOY40_08195) murB 1817142..1818161 (+) 1020 WP_258650010.1 UDP-N-acetylmuramate dehydrogenase -
  LOY40_RS08200 (LOY40_08200) - 1818431..1818901 (+) 471 WP_030137696.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22840.97 Da        Isoelectric Point: 8.0840

>NTDB_id=715293 LOY40_RS08165 WP_030137690.1 1813641..1814276(+) (exbB) [Pseudomonas alvandae strain B21-020]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSAFTGTGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=715293 LOY40_RS08165 WP_030137690.1 1813641..1814276(+) (exbB) [Pseudomonas alvandae strain B21-020]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGTCGCGTAACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAACTGCGGGCCAGTTCGCCGCTGGGAGAAATCCTTGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAGGCGGCGGCCCGGGTCATCCATGAACTGGAGCGCTACCT
CAATGCATTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGTTTGTTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCGCCTTTACCGGTACCGGCATGACCACCAATGCGTCGGTGCTGGCGGGCGGTATTTCCAAGGCCTTGATCACCACCGCC
GCCGGTTTGATGGTGGGGATCCCCTCGGTGTTTTTCCATCGTTTCCTGCAGCGCCGCGTCGACGAGTTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTCCAGGGCGACCGTGATGTGGACCTGGCCGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.19

99.526

0.858