Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY40_RS08160 Genome accession   NZ_CP102179
Coordinates   1811298..1813544 (+) Length   748 a.a.
NCBI ID   WP_258650005.1    Uniprot ID   -
Organism   Pseudomonas alvandae strain B21-020     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1806298..1818544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY40_RS08140 (LOY40_08140) - 1808007..1808630 (+) 624 WP_030137685.1 glutathione S-transferase family protein -
  LOY40_RS08145 (LOY40_08145) - 1808765..1809697 (+) 933 WP_249875662.1 ABC transporter ATP-binding protein -
  LOY40_RS08150 (LOY40_08150) - 1809694..1810473 (+) 780 WP_030137687.1 ABC transporter permease -
  LOY40_RS08155 (LOY40_08155) - 1810638..1811153 (-) 516 WP_030137688.1 DUF2062 domain-containing protein -
  LOY40_RS08160 (LOY40_08160) comA 1811298..1813544 (+) 2247 WP_258650005.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY40_RS08165 (LOY40_08165) exbB 1813641..1814276 (+) 636 WP_030137690.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY40_RS08170 (LOY40_08170) - 1814273..1814701 (+) 429 WP_249875658.1 biopolymer transporter ExbD -
  LOY40_RS08175 (LOY40_08175) lpxK 1814701..1815711 (+) 1011 WP_030137692.1 tetraacyldisaccharide 4'-kinase -
  LOY40_RS08180 (LOY40_08180) - 1815735..1815920 (+) 186 WP_003179363.1 Trm112 family protein -
  LOY40_RS08185 (LOY40_08185) kdsB 1815917..1816681 (+) 765 WP_030137693.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY40_RS08190 (LOY40_08190) - 1816681..1817145 (+) 465 WP_030137694.1 low molecular weight protein-tyrosine-phosphatase -
  LOY40_RS08195 (LOY40_08195) murB 1817142..1818161 (+) 1020 WP_258650010.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81455.77 Da        Isoelectric Point: 9.6667

>NTDB_id=715292 LOY40_RS08160 WP_258650005.1 1811298..1813544(+) (comA) [Pseudomonas alvandae strain B21-020]
MRTVMIALALGLLVPIFLPALPPPWLIVAMAITALVMLPFRTCPASFFLLGLAWACVGAQLALDDRLPAALDGETRWVEG
NVVGLPQYGEGMVRFELADAHSRRTRLPALMRLAWYGGPPVRSGEKWRLAVKLKRPVGLLNPHGFDYESWLLSRGIGATG
TVKEGLRVQPTQGAWRDGVRQALAKVDAQGRSGALMALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLFAGLVYLL
VAGAARYGVWPARLPWLPWACALAFVAAVGYGLLAGFEVPVRRACTMIGLVLLWRWRYRQAEPWWAWLLAFIGVLMFDPL
ASLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLIALGLCPLLLILGLPVSLSGPLVNLVAVPWISLLVLPAAL
LGTALLPVPGVGENLLWVAGGLLDLLFKGLELVAGRMAAWMPPAVPLWALCIAALGAVLLLLPKGLPLRVLGWPMLMLIV
FPPREQVPHGRAEIWHFDVGQGLAVLVRTHRHALLYDAGPRFGEADAGERVVVPTLRKLGVGRLDLMLLSHADADHAGGA
QAVRNGLATTRVISGDPDALPADLLAAPCDSGESWEWDGVRFELWRWASAVESNQKSCVLLIEADGERLLLTGDIDAHAE
RAMLDGPLGAPIHWLAAPHHGSRSSSSMALLARLKPHSVLISRGRNNAFGHPHPWVMQRYRKLGMAIHDSAEQGAIRLQL
GAFEPAHTEAGNRRYWREPPSAGPSPRH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=715292 LOY40_RS08160 WP_258650005.1 1811298..1813544(+) (comA) [Pseudomonas alvandae strain B21-020]
ATGCGCACAGTGATGATCGCGCTCGCACTCGGGTTGCTGGTCCCGATTTTCTTACCGGCGTTGCCGCCACCGTGGCTGAT
CGTGGCGATGGCGATAACAGCGCTGGTCATGCTGCCGTTTCGCACCTGCCCGGCCAGTTTTTTTCTTCTCGGATTGGCCT
GGGCCTGCGTTGGGGCGCAGCTTGCGCTGGATGACCGGTTGCCCGCTGCCCTGGACGGTGAAACCCGCTGGGTCGAGGGA
AACGTCGTCGGTTTGCCGCAATACGGTGAGGGCATGGTGCGTTTCGAGCTTGCCGATGCCCACTCCCGACGCACGCGCTT
GCCTGCGTTGATGCGCCTGGCCTGGTATGGCGGGCCGCCGGTCAGGAGCGGTGAAAAGTGGCGCCTGGCAGTGAAGCTCA
AGCGGCCCGTCGGGTTGCTCAACCCCCATGGTTTCGACTACGAATCGTGGCTGCTGAGCCGTGGCATCGGCGCGACCGGC
ACCGTCAAGGAGGGTTTGCGGGTGCAGCCGACGCAGGGCGCTTGGCGCGATGGGGTGCGCCAGGCGTTGGCAAAGGTCGA
TGCCCAAGGGCGTTCCGGTGCGCTGATGGCGCTGGTGCTTGGCGACGGGGCTGGATTGAGCCGCGAAGATTGGCAAGTAC
TGCAAGACACCGGCACGGTCCATCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGTTTGCCGGCTTGGTGTATCTGCTG
GTGGCTGGCGCGGCGCGTTATGGCGTTTGGCCGGCGCGTCTGCCGTGGTTGCCCTGGGCCTGCGCCTTGGCTTTCGTCGC
CGCTGTGGGCTACGGCTTGCTCGCCGGATTTGAAGTGCCGGTGCGGCGGGCCTGCACGATGATCGGTCTGGTGTTGCTGT
GGCGCTGGCGTTACCGCCAAGCCGAACCTTGGTGGGCCTGGCTGCTGGCCTTCATCGGCGTGTTGATGTTCGATCCGCTG
GCGAGCCTGCGCCCCGGGTTCTGGTTGTCGTTTGCCGCCGTCGCGATATTGATGTTCACCTTCGGCGGTCGCCTGGGCCC
TTGGCGCTGGTGGCAGACCTGGACCCGAGCCCAGTGGCTGATTGCGCTCGGCCTATGCCCGTTGTTATTGATCCTTGGCT
TGCCGGTCAGCCTGAGCGGTCCGTTGGTCAACCTGGTGGCGGTGCCCTGGATCAGTTTGCTGGTATTACCGGCGGCACTG
CTTGGCACGGCGTTGCTGCCGGTTCCGGGCGTCGGGGAAAACCTGTTGTGGGTCGCCGGTGGGTTGCTCGATCTGCTGTT
CAAAGGCCTCGAACTGGTTGCAGGGCGAATGGCGGCCTGGATGCCTCCCGCTGTCCCGTTGTGGGCGCTGTGTATCGCGG
CGCTCGGCGCTGTGCTGTTGTTGCTGCCCAAGGGCCTGCCACTGCGTGTCCTGGGTTGGCCGATGTTGATGCTGATCGTG
TTTCCTCCTCGGGAACAGGTGCCCCACGGACGCGCCGAAATCTGGCATTTTGACGTCGGCCAGGGGCTGGCAGTCCTGGT
GCGTACCCATCGGCATGCGTTGCTTTATGACGCGGGGCCACGCTTTGGCGAGGCCGATGCAGGCGAGCGCGTGGTGGTTC
CGACCTTGCGCAAGCTTGGTGTGGGACGGTTGGACCTGATGCTGCTCAGCCATGCCGACGCTGATCATGCCGGCGGAGCA
CAAGCGGTGCGCAATGGGTTGGCGACGACTCGGGTCATCAGCGGCGATCCTGATGCGCTGCCCGCCGATCTGCTGGCGGC
GCCGTGCGACAGCGGCGAGAGCTGGGAATGGGATGGGGTCCGGTTCGAGCTGTGGCGCTGGGCGTCAGCGGTCGAAAGCA
ACCAGAAGTCCTGCGTCTTGTTGATCGAAGCCGACGGCGAGCGCTTGCTGTTAACCGGGGATATCGATGCCCACGCCGAG
CGAGCCATGCTCGATGGCCCGCTGGGGGCGCCGATTCATTGGCTGGCCGCGCCGCATCATGGCAGTCGCAGTTCGTCGTC
GATGGCGCTGCTGGCGCGTCTCAAGCCGCATTCGGTATTGATTTCCCGAGGGCGAAACAACGCATTCGGCCACCCGCATC
CCTGGGTCATGCAACGCTATAGGAAATTGGGCATGGCAATCCACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGTGCATTCGAACCCGCGCACACCGAGGCTGGGAATCGCCGCTACTGGCGCGAGCCGCCGTCCGCTGGGCCGTCGCCCCG
GCATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-675)

Domain of unknown function (DUF4131) (DUF4131)

(21-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.504

95.455

0.578