Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY64_RS21440 Genome accession   NZ_CP102177
Coordinates   4846413..4848647 (-) Length   744 a.a.
NCBI ID   WP_265068144.1    Uniprot ID   -
Organism   Pseudomonas corrugata strain B21-055     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4841413..4853647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY64_RS21405 (LOY64_21420) murB 4841698..4842717 (-) 1020 WP_024776918.1 UDP-N-acetylmuramate dehydrogenase -
  LOY64_RS21410 (LOY64_21425) - 4842714..4843178 (-) 465 WP_024776919.1 low molecular weight protein-tyrosine-phosphatase -
  LOY64_RS21415 (LOY64_21430) kdsB 4843178..4843942 (-) 765 WP_053190745.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY64_RS21420 (LOY64_21435) - 4843939..4844124 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY64_RS21425 (LOY64_21440) lpxK 4844148..4845158 (-) 1011 WP_265068143.1 tetraacyldisaccharide 4'-kinase -
  LOY64_RS21430 (LOY64_21445) - 4845158..4845586 (-) 429 WP_024776922.1 biopolymer transporter ExbD -
  LOY64_RS21435 (LOY64_21450) exbB 4845583..4846218 (-) 636 WP_162164403.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY64_RS21440 (LOY64_21455) comA 4846413..4848647 (-) 2235 WP_265068144.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY64_RS21445 (LOY64_21460) - 4848793..4849308 (+) 516 WP_024776925.1 DUF2062 domain-containing protein -
  LOY64_RS21450 (LOY64_21465) - 4849449..4850228 (-) 780 WP_024776926.1 ABC transporter permease -
  LOY64_RS21455 (LOY64_21470) - 4850225..4851157 (-) 933 WP_053190739.1 ABC transporter ATP-binding protein -
  LOY64_RS21460 (LOY64_21475) - 4851291..4851914 (-) 624 WP_055136176.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81403.46 Da        Isoelectric Point: 9.1942

>NTDB_id=715272 LOY64_RS21440 WP_265068144.1 4846413..4848647(-) (comA) [Pseudomonas corrugata strain B21-055]
MRTGWVALALGLVAPVFFPALPPLWLVSALPMLALMVLPFRMYPLGFFLLGLAWACLSAQFALDERLPALLDGETRWVEG
RVTGLPHYSDGVVRFDLVEARSRRTRLPTSMRLAWFGGAPVSSGEHWRLAVKLKRPAGLMNPHGFDHEAWLLSRGIGATG
TVKDGRRLQPAQGAWRDGVRQALAQVDAQGRSGALMALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGVWPGRLPWLPWACALAFFAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKHPDPWWAWLLAFDGVLLFDPL
ASLRPGFWLSFAAVAVLMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLILGLPVSLSGPLVNLLAVPWISLLVLPSAL
LGTVLLPVPFIGETLLWIAGGLLDLMFEGLALVAGRVPVWVPVPVPLWTWCIAALGAFVLLLPKGVPLRLLGWPMLLLMV
FAPREEVPSGRAHIWQLDVGQGLAVLVRTRHHNLLYDAGPRFGDADVGERVVLPTLRKLGVRKLDLMLLSHADADHAGGA
QAVRNGLATFRVISGDPAALPVALEAEACDSGEHWEWDGVRFEVWQWLSAHESNQKSCVLLVEANGERILLTGDIDTHAE
RALLDGPLAVPTQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRLDMTIYDSAEQGAIRLQL
GAFELPDTQAGHRRYWRDPPAAGP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=715272 LOY64_RS21440 WP_265068144.1 4846413..4848647(-) (comA) [Pseudomonas corrugata strain B21-055]
ATGCGCACAGGGTGGGTCGCGCTTGCACTGGGGCTGGTGGCCCCGGTTTTCTTTCCGGCATTGCCGCCGTTGTGGCTGGT
CTCCGCGTTGCCGATGCTGGCGCTGATGGTGCTGCCGTTTCGAATGTATCCGCTGGGTTTTTTCCTGTTGGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTTCGCGCTGGACGAGCGCCTGCCGGCGTTGCTGGATGGCGAAACCCGTTGGGTCGAAGGG
CGTGTCACCGGGTTGCCGCACTACAGTGACGGCGTGGTGCGCTTCGATCTGGTCGAGGCACGATCGCGTCGCACCCGGCT
ACCGACGTCAATGCGTCTGGCCTGGTTCGGGGGGGCACCGGTGAGCAGTGGCGAGCATTGGCGGTTGGCGGTGAAACTGA
AGCGGCCCGCCGGGCTGATGAACCCGCACGGTTTTGACCATGAAGCCTGGTTGCTGAGTCGAGGCATTGGCGCAACCGGT
ACGGTCAAGGATGGTCGTCGTTTGCAACCGGCCCAGGGGGCTTGGCGCGACGGGGTACGCCAGGCACTGGCACAGGTCGA
TGCCCAAGGCCGCTCCGGTGCGCTGATGGCATTGGTCCTGGGCGATGGCGGCGGGTTGAGCCGTGAAGACTGGCAGGTGC
TGCAAGACACCGGCACGGTCCATCTGCTGGTCATTTCCGGACAACACATCGGCTTGCTTGCCGGCCTGGTGTACCTGCTG
GTGGCCGGTGCGGCGCGTTATGGCGTGTGGCCGGGGCGTCTGCCATGGTTACCGTGGGCCTGTGCCCTGGCCTTCTTCGC
GGCCCTGGGCTACGGCTTGCTTGCCGGGTTCGAGGTGCCGGTGCGGCGGGCCTGCGCAATGATTGGCCTGGTGCTGCTGT
GGCGCTTGCGCTTCAAACACCCCGATCCCTGGTGGGCGTGGCTGCTGGCTTTCGATGGCGTGCTGCTGTTCGATCCTTTG
GCCAGCCTGCGGCCGGGATTCTGGCTGTCATTTGCCGCAGTCGCGGTACTGATGTTCACCTTCGGCGGGCGCCTGGGACC
CTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAGTGGTTGGTGGCAGTCGGATTGTGCCCGTTGTTGCTGATATTGGGCC
TGCCCGTGAGCCTCAGCGGGCCGCTGGTGAATCTTCTGGCGGTGCCCTGGATCAGCCTGCTGGTACTGCCGTCGGCGTTG
CTCGGCACGGTATTGCTGCCGGTGCCGTTCATCGGTGAAACGCTGCTATGGATCGCCGGGGGGTTGCTCGACCTGATGTT
CGAGGGGCTCGCGCTGGTGGCCGGGCGAGTGCCGGTCTGGGTCCCCGTTCCGGTCCCTCTGTGGACGTGGTGCATCGCAG
CGCTCGGCGCCTTTGTGCTGTTATTGCCCAAGGGCGTGCCGCTGCGTCTACTGGGGTGGCCGATGTTGCTGCTGATGGTG
TTTGCACCACGGGAAGAGGTGCCGTCAGGGCGAGCGCATATCTGGCAACTCGACGTTGGCCAGGGGCTGGCAGTGCTGGT
GCGCACCCGTCACCACAACCTGCTCTATGACGCAGGACCACGTTTCGGCGATGCCGATGTGGGCGAGCGTGTCGTGCTAC
CGACCTTGCGCAAACTGGGAGTGCGGAAGCTGGACCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCCGGCGGTGCC
CAGGCCGTGCGTAACGGGCTGGCAACGTTCCGGGTAATCAGCGGCGATCCGGCCGCGTTGCCCGTCGCCCTTGAAGCTGA
GGCCTGCGACAGCGGCGAACATTGGGAATGGGACGGCGTGCGCTTCGAAGTGTGGCAATGGTTGTCGGCCCATGAAAGCA
ACCAGAAATCCTGCGTCTTGCTGGTCGAGGCCAACGGTGAACGGATCCTGTTGACCGGCGACATCGATACCCATGCCGAG
CGCGCGTTGCTCGATGGCCCCCTGGCAGTGCCGACCCAGTGGCTGGCTGCGCCCCACCATGGCAGCCGCAGCTCATCGTC
GATGGCGTTGCTGTCGCGCCTCAAGCCACATTCGGTGTTGATCTCCCGGGGCCAGGGCAACGCGTTTGGCCATCCGCATC
CTCAGGTGATGGCCCGGTATCGACGGTTGGACATGACGATCTACGACAGTGCCGAACAGGGCGCCATTCGTCTGCAACTG
GGGGCCTTCGAGCTGCCGGATACCCAGGCCGGCCACCGGCGCTACTGGCGTGACCCGCCGGCTGCGGGGCCCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.056

96.237

0.578