Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY64_RS21435 Genome accession   NZ_CP102177
Coordinates   4845583..4846218 (-) Length   211 a.a.
NCBI ID   WP_162164403.1    Uniprot ID   -
Organism   Pseudomonas corrugata strain B21-055     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4840583..4851218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY64_RS21400 (LOY64_21415) - 4840962..4841432 (-) 471 WP_024776917.1 (2Fe-2S)-binding protein -
  LOY64_RS21405 (LOY64_21420) murB 4841698..4842717 (-) 1020 WP_024776918.1 UDP-N-acetylmuramate dehydrogenase -
  LOY64_RS21410 (LOY64_21425) - 4842714..4843178 (-) 465 WP_024776919.1 low molecular weight protein-tyrosine-phosphatase -
  LOY64_RS21415 (LOY64_21430) kdsB 4843178..4843942 (-) 765 WP_053190745.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY64_RS21420 (LOY64_21435) - 4843939..4844124 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY64_RS21425 (LOY64_21440) lpxK 4844148..4845158 (-) 1011 WP_265068143.1 tetraacyldisaccharide 4'-kinase -
  LOY64_RS21430 (LOY64_21445) - 4845158..4845586 (-) 429 WP_024776922.1 biopolymer transporter ExbD -
  LOY64_RS21435 (LOY64_21450) exbB 4845583..4846218 (-) 636 WP_162164403.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY64_RS21440 (LOY64_21455) comA 4846413..4848647 (-) 2235 WP_265068144.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY64_RS21445 (LOY64_21460) - 4848793..4849308 (+) 516 WP_024776925.1 DUF2062 domain-containing protein -
  LOY64_RS21450 (LOY64_21465) - 4849449..4850228 (-) 780 WP_024776926.1 ABC transporter permease -
  LOY64_RS21455 (LOY64_21470) - 4850225..4851157 (-) 933 WP_053190739.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22798.83 Da        Isoelectric Point: 8.0840

>NTDB_id=715271 LOY64_RS21435 WP_162164403.1 4845583..4846218(-) (exbB) [Pseudomonas corrugata strain B21-055]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRSSSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGVSTNASALAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGSKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=715271 LOY64_RS21435 WP_162164403.1 4845583..4846218(-) (exbB) [Pseudomonas corrugata strain B21-055]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTTAACAAGGACAAGCTCAAGGAGCTGCGGTCCAGTTCGCCATTGGGCGAGATCCTGGCGGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATAGAGGAAGCCGCGGCCCGGGTCATCCATGAGCTGGAGCGCTACAT
CAATGCCCTGGGTACCATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTTACCGGATCCGGCGTAAGTACCAATGCCTCGGCGTTGGCCGGTGGTATCTCCAAAGCCTTGATCACCACCGCC
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCATCGGTTCCTGCAGCGCCGCGTCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTCGAGGTGGTGCAGGGCGATCGTGACGTGGACCTGGCCGGGAGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844