Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SBA_RS17480 Genome accession   NZ_AP018817
Coordinates   3512308..3513675 (-) Length   455 a.a.
NCBI ID   WP_261935331.1    Uniprot ID   -
Organism   Sphingomonas bisphenolicum strain AO1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3507308..3518675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBA_RS17455 (SBA_ch1_34610) - 3507867..3508484 (+) 618 WP_261935329.1 TetR/AcrR family transcriptional regulator -
  SBA_RS17460 (SBA_ch1_34620) obgE 3508515..3509612 (+) 1098 WP_261935330.1 GTPase ObgE -
  SBA_RS17465 (SBA_ch1_34630) proB 3509713..3510840 (+) 1128 WP_224548444.1 glutamate 5-kinase -
  SBA_RS17470 (SBA_ch1_34640) - 3510867..3511763 (+) 897 WP_224548443.1 NAD(P)-dependent oxidoreductase -
  SBA_RS17475 (SBA_ch1_34650) - 3511778..3512296 (-) 519 WP_066604042.1 CvpA family protein -
  SBA_RS17480 (SBA_ch1_34660) radA 3512308..3513675 (-) 1368 WP_261935331.1 DNA repair protein RadA Machinery gene
  SBA_RS17485 (SBA_ch1_34670) - 3513765..3514463 (+) 699 WP_261935332.1 endonuclease/exonuclease/phosphatase family protein -
  SBA_RS17490 (SBA_ch1_34680) - 3514530..3516863 (+) 2334 WP_261936782.1 patatin-like protein -
  SBA_RS17495 (SBA_ch1_34690) - 3516893..3517372 (+) 480 WP_261936783.1 hypothetical protein -
  SBA_RS17500 (SBA_ch1_34700) - 3517377..3517667 (-) 291 WP_224548439.1 4a-hydroxytetrahydrobiopterin dehydratase -
  SBA_RS17505 (SBA_ch1_34710) - 3517725..3518132 (+) 408 WP_066604047.1 metallopeptidase family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 47730.81 Da        Isoelectric Point: 6.6080

>NTDB_id=71527 SBA_RS17480 WP_261935331.1 3512308..3513675(-) (radA) [Sphingomonas bisphenolicum strain AO1]
MAKAKRKFVCQQCGTVAARWQGQCEDCGEWNSIVEEAAETVFSSRHDLQNGGRAITLIGLDSKVELPPRTSTGIAEFDRA
LGGGIVAGSATLIGGDPGIGKSTLLLQAAARVAARGLSVAYISGEEATDQVRLRAQRLGLGNAPVMLASATSVRDILTTL
SEGPPPALLVIDSIQTMHSDLIEGAPGTVSQVRASSQELIKFAKQRGTALILVGHVTKDGSIAGPRVLEHMVDTVLAFEG
ERSHQYRILRAIKNRFGGTDEIGVFAMVAEGLEEVANPSALFLTQRDETVTGATVFPALEGTRPVLVEIQALVVRLSSGA
TPRRAVVGWDSGRLAMVLAVLEARCGLSFSTCEVYLNVAGGYRLSDPAADLAVAAALVSALSEKPLPSDVILFGEIALSS
EIRPVAHAPLRLREAAKLGFNRAFIPAAAADGVKGIAVSGFRTLAQLVDQMLGHG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=71527 SBA_RS17480 WP_261935331.1 3512308..3513675(-) (radA) [Sphingomonas bisphenolicum strain AO1]
ATGGCCAAGGCAAAGCGCAAATTCGTCTGTCAGCAATGCGGCACCGTCGCGGCCCGCTGGCAGGGCCAGTGCGAGGATTG
CGGCGAGTGGAACAGCATCGTCGAGGAAGCGGCCGAAACCGTCTTCTCCTCGCGCCACGACCTGCAAAATGGCGGCCGGG
CGATCACGCTGATCGGCCTCGACAGCAAGGTCGAACTGCCCCCGCGCACCAGCACCGGCATCGCCGAGTTCGACCGGGCG
CTGGGCGGCGGCATCGTCGCGGGTTCCGCGACGCTGATCGGCGGCGATCCGGGCATCGGCAAATCGACGCTTCTGCTGCA
AGCGGCCGCGCGGGTCGCCGCGCGCGGGCTGTCCGTCGCCTATATTAGCGGCGAGGAAGCGACCGACCAGGTCCGCTTGC
GCGCGCAGCGGCTGGGCCTGGGCAATGCGCCGGTCATGCTCGCCAGCGCGACGTCGGTGCGCGACATACTGACGACCCTG
AGCGAAGGGCCGCCGCCCGCCCTGCTGGTGATCGATTCGATCCAGACGATGCATAGCGACCTGATCGAGGGCGCGCCGGG
CACCGTCAGCCAGGTCCGCGCCTCGTCGCAGGAACTGATCAAATTCGCCAAGCAACGCGGCACTGCCCTCATTCTCGTCG
GCCATGTGACCAAGGACGGCAGCATCGCTGGCCCGCGCGTGCTGGAACATATGGTCGATACCGTGCTGGCGTTCGAGGGC
GAGCGCAGCCACCAATATCGCATTCTGCGCGCGATCAAGAATCGCTTCGGCGGCACCGACGAGATCGGCGTCTTCGCCAT
GGTCGCCGAAGGACTGGAGGAGGTCGCCAATCCGTCCGCCCTGTTCCTGACCCAGCGCGACGAGACGGTGACGGGCGCGA
CCGTATTCCCCGCACTGGAAGGCACGCGGCCGGTGCTGGTCGAAATCCAGGCGCTGGTCGTGCGCCTGTCGAGCGGCGCG
ACCCCCCGGCGCGCGGTGGTCGGCTGGGACAGCGGGCGGCTCGCCATGGTGCTGGCCGTGCTGGAGGCGCGCTGTGGCCT
CAGCTTCTCGACCTGCGAAGTCTATCTGAACGTCGCGGGCGGCTATCGCCTGTCCGATCCTGCCGCGGACCTCGCCGTCG
CCGCCGCTCTGGTGTCGGCTTTGTCGGAGAAGCCGTTGCCGTCGGACGTCATCCTGTTCGGCGAGATCGCGCTGTCGAGC
GAAATCCGCCCCGTTGCCCATGCCCCGCTGCGCCTGCGCGAAGCCGCCAAGCTCGGCTTCAACCGCGCCTTCATCCCCGC
CGCCGCGGCGGACGGGGTGAAGGGAATCGCGGTCAGCGGTTTTCGCACCCTCGCGCAGCTTGTTGACCAGATGCTGGGAC
ACGGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-220)

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.268

100

0.49
  radA Streptococcus mitis NCTC 12261

44.805

100

0.455
  radA Streptococcus pneumoniae Rx1

44.589

100

0.453
  radA Streptococcus pneumoniae D39

44.589

100

0.453
  radA Streptococcus pneumoniae R6

44.589

100

0.453
  radA Streptococcus pneumoniae TIGR4

44.589

100

0.453
  radA Streptococcus mitis SK321

44.372

100

0.451

Multiple sequence alignment