Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY71_RS18670 Genome accession   NZ_CP102176
Coordinates   4358051..4360285 (-) Length   744 a.a.
NCBI ID   WP_047699060.1    Uniprot ID   A0AAX2DB04
Organism   Pseudomonas mediterranea strain B21-060     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4353051..4365285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY71_RS18635 (LOY71_18640) murB 4353423..4354442 (-) 1020 WP_055129197.1 UDP-N-acetylmuramate dehydrogenase -
  LOY71_RS18640 (LOY71_18645) - 4354439..4354903 (-) 465 WP_047699071.1 low molecular weight protein-tyrosine-phosphatase -
  LOY71_RS18645 (LOY71_18650) kdsB 4354903..4355667 (-) 765 WP_047699069.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY71_RS18650 (LOY71_18655) - 4355664..4355849 (-) 186 WP_047699067.1 Trm112 family protein -
  LOY71_RS18655 (LOY71_18660) lpxK 4355873..4356883 (-) 1011 WP_047699064.1 tetraacyldisaccharide 4'-kinase -
  LOY71_RS18660 (LOY71_18665) - 4356883..4357311 (-) 429 WP_047699062.1 biopolymer transporter ExbD -
  LOY71_RS18665 (LOY71_18670) exbB 4357308..4357943 (-) 636 WP_053150108.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY71_RS18670 (LOY71_18675) comA 4358051..4360285 (-) 2235 WP_047699060.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY71_RS18675 (LOY71_18680) - 4360430..4360945 (+) 516 WP_047699058.1 DUF2062 domain-containing protein -
  LOY71_RS18680 (LOY71_18685) - 4361087..4361866 (-) 780 WP_047699055.1 ABC transporter permease -
  LOY71_RS18685 (LOY71_18690) - 4361863..4362795 (-) 933 WP_047699053.1 ABC transporter ATP-binding protein -
  LOY71_RS18690 (LOY71_18695) - 4362929..4363552 (-) 624 WP_047699051.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81060.23 Da        Isoelectric Point: 10.0936

>NTDB_id=715243 LOY71_RS18670 WP_047699060.1 4358051..4360285(-) (comA) [Pseudomonas mediterranea strain B21-060]
MRTGLVALALGLVAPVFFPALPPLWLVAAMPMLALMVLPFRTYPLGFFLLGLAWACLSAQFALDERLPAALDGETRWVEG
RVIGLPQYSEGVVRFDLVEARSRRTRLPMSMRLAWFGGPPLSSGERWRLAVKLKRPAGLLNPHSFDHQAWLLSRGIGATG
TVKDGRRLQPARGAWRDGVRQALAQVDAQGRSGALMALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLMYLL
VAGAARYGVWPGRLPWLPWACGLAFIAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKHPDPWRAWLLAFDGVLLFDPL
ASLRPGFWLSFAAVAVLMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLILGLPVSLSGPLVNLVAVPWISLLVLPSAL
LGTVLLPVPLIGEALLWIAGGLLDLLFKGLALVAGRVPAWIPVPISFWAWCIAALGAVVLLLPKGIPLRVLGWPMLLLMV
FAPREEVPSGRAEVWHLDVGQGLAVLVRTRRHSLLYDAGPRFGDSDVGERVVLPTLRKLGVRKLDLMLLSHADADHAGGA
QAVRNGLATLRVISGDPAALPVVLEAEACDSGEQWEWDGVRFEAWQWSSALESNQKSCVLLVEANGERLLLTGDIDTHAE
RALLDGPLAVPTQWLAAPHHGSRSSSSMALLSRLEPHSVLISRGQGNAFGHPHPQVIARYRRLGMAIYDSAEQGAIRLQL
GAFERPDSQAGHRRYWRDPPPAGP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=715243 LOY71_RS18670 WP_047699060.1 4358051..4360285(-) (comA) [Pseudomonas mediterranea strain B21-060]
ATGCGCACAGGGTTGGTCGCGCTTGCACTGGGGCTGGTGGCCCCGGTTTTCTTTCCGGCATTGCCGCCGTTGTGGCTGGT
CGCGGCGATGCCGATGCTGGCGCTGATGGTGTTGCCGTTTCGGACGTATCCGCTGGGTTTTTTCCTGTTGGGGTTGGCCT
GGGCCTGCCTGTCGGCGCAATTCGCGCTGGACGAACGCCTGCCTGCCGCACTGGATGGCGAAACCCGTTGGGTCGAAGGG
CGGGTCATCGGTTTGCCGCAGTACAGTGAAGGCGTGGTGCGCTTCGATCTGGTCGAGGCCCGATCGCGTCGTACCCGCCT
GCCGATGTCAATGCGCCTGGCCTGGTTCGGCGGGCCACCGTTGAGCAGTGGCGAGCGGTGGCGGTTGGCGGTGAAGCTCA
AGCGACCTGCCGGGCTTTTGAATCCACACAGTTTCGACCATCAAGCCTGGTTGTTGAGCCGGGGCATTGGCGCAACCGGT
ACGGTCAAGGATGGCCGTCGCTTGCAGCCGGCCCGGGGCGCTTGGCGCGATGGGGTGCGCCAGGCATTGGCGCAAGTCGA
TGCCCAAGGCCGCTCCGGTGCGCTGATGGCATTGGTCCTGGGCGATGGCGGCGGGTTGAGCCGTGAAGACTGGCAGGTGT
TGCAGGACACCGGAACTGTCCATTTGCTGGTGATTTCCGGTCAGCACATCGGCCTGCTTGCCGGCCTGATGTACCTGCTG
GTGGCCGGTGCGGCGCGTTATGGCGTGTGGCCGGGACGCCTGCCGTGGTTACCCTGGGCCTGCGGGCTGGCCTTCATCGC
GGCCCTGGGCTACGGCTTGCTTGCCGGGTTCGAAGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGCTGTTGT
GGCGCTTGCGCTTCAAGCATCCCGACCCCTGGCGGGCGTGGTTGCTGGCCTTCGATGGGGTGTTGTTGTTCGATCCCTTG
GCCAGCCTGCGACCGGGGTTCTGGCTGTCATTCGCCGCGGTGGCGGTGCTGATGTTCACCTTCGGCGGGCGCCTGGGCCC
CTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAGTGGCTGGTGGCGGTCGGGCTATGCCCGTTGTTGTTGATATTGGGCC
TGCCGGTGAGTCTCAGCGGGCCGCTGGTGAACCTGGTGGCGGTACCCTGGATCAGCCTGCTGGTATTGCCGTCGGCATTG
CTCGGCACGGTGTTGCTGCCGGTGCCCCTCATCGGCGAAGCGCTGCTATGGATTGCCGGGGGCTTGCTCGATCTGCTGTT
CAAGGGCCTCGCACTGGTGGCCGGGCGAGTACCGGCCTGGATCCCCGTTCCGATATCTTTTTGGGCTTGGTGCATCGCCG
CGCTTGGCGCTGTCGTGCTGTTACTGCCCAAGGGAATACCGCTGCGTGTGCTGGGTTGGCCGATGTTGCTGCTGATGGTG
TTTGCGCCACGGGAAGAAGTGCCGTCAGGACGAGCGGAGGTCTGGCATCTGGACGTGGGCCAGGGACTGGCAGTGCTGGT
GCGCACCCGCCGTCACAGCCTGCTCTATGATGCAGGGCCTCGTTTTGGCGATTCCGATGTGGGCGAGCGTGTCGTGCTGC
CGACCTTGCGCAAGTTGGGTGTGCGAAAGCTGGACCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCCGGTGGTGCC
CAGGCCGTGCGCAACGGGCTGGCAACGCTGCGGGTGATCAGCGGCGATCCGGCCGCGTTGCCCGTCGTCCTTGAAGCCGA
GGCCTGCGACAGCGGCGAACAGTGGGAATGGGACGGCGTCCGCTTCGAAGCGTGGCAATGGTCATCGGCTCTTGAAAGCA
ATCAGAAATCCTGTGTCCTGCTGGTCGAAGCCAATGGCGAGCGGCTGCTGTTGACCGGCGACATCGACACCCATGCCGAA
CGCGCCTTGCTCGATGGCCCGCTGGCGGTGCCGACCCAATGGCTGGCCGCGCCCCATCATGGCAGTCGCAGTTCATCGTC
GATGGCGTTGCTGTCGCGTCTCGAGCCGCATTCGGTATTGATCTCCCGAGGCCAGGGCAACGCGTTCGGCCATCCCCATC
CCCAGGTGATAGCCCGCTATCGGCGGTTGGGCATGGCCATTTACGACAGTGCCGAACAAGGCGCCATTCGTCTGCAACTG
GGGGCCTTCGAGCGGCCGGACTCCCAGGCCGGCCACCGGCGCTATTGGCGCGACCCGCCGCCTGCGGGGCCATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.615

96.237

0.583