Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY71_RS18665 Genome accession   NZ_CP102176
Coordinates   4357308..4357943 (-) Length   211 a.a.
NCBI ID   WP_053150108.1    Uniprot ID   -
Organism   Pseudomonas mediterranea strain B21-060     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4352308..4362943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY71_RS18630 (LOY71_18635) - 4352691..4353161 (-) 471 WP_055129198.1 (2Fe-2S)-binding protein -
  LOY71_RS18635 (LOY71_18640) murB 4353423..4354442 (-) 1020 WP_055129197.1 UDP-N-acetylmuramate dehydrogenase -
  LOY71_RS18640 (LOY71_18645) - 4354439..4354903 (-) 465 WP_047699071.1 low molecular weight protein-tyrosine-phosphatase -
  LOY71_RS18645 (LOY71_18650) kdsB 4354903..4355667 (-) 765 WP_047699069.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY71_RS18650 (LOY71_18655) - 4355664..4355849 (-) 186 WP_047699067.1 Trm112 family protein -
  LOY71_RS18655 (LOY71_18660) lpxK 4355873..4356883 (-) 1011 WP_047699064.1 tetraacyldisaccharide 4'-kinase -
  LOY71_RS18660 (LOY71_18665) - 4356883..4357311 (-) 429 WP_047699062.1 biopolymer transporter ExbD -
  LOY71_RS18665 (LOY71_18670) exbB 4357308..4357943 (-) 636 WP_053150108.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY71_RS18670 (LOY71_18675) comA 4358051..4360285 (-) 2235 WP_047699060.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY71_RS18675 (LOY71_18680) - 4360430..4360945 (+) 516 WP_047699058.1 DUF2062 domain-containing protein -
  LOY71_RS18680 (LOY71_18685) - 4361087..4361866 (-) 780 WP_047699055.1 ABC transporter permease -
  LOY71_RS18685 (LOY71_18690) - 4361863..4362795 (-) 933 WP_047699053.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.95 Da        Isoelectric Point: 8.0840

>NTDB_id=715242 LOY71_RS18665 WP_053150108.1 4357308..4357943(-) (exbB) [Pseudomonas mediterranea strain B21-060]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMSTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGSKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=715242 LOY71_RS18665 WP_053150108.1 4357308..4357943(-) (exbB) [Pseudomonas mediterranea strain B21-060]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACGCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCGTTGGGCGAGATCCTGGCGGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAAGCCGCGGCCCGGGTCATCCATGAGTTGGAGCGCTACAT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTTACCGGATCTGGCATGAGCACCAATGCCTCGGTGCTGGCCGGTGGTATCTCCAAAGCCCTGATCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGTCCGTATTCTTCCACCGGTTCCTGCAGCGCCGCGTCGACGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTCGAGGTGGTGCAGGGCGATCGTGACGTGGACCTGGCCGGGAGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.714

99.526

0.853