Detailed information NTG0715220

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY65_RS22920
• Genome accession: NZ_CP102175
• Coordinates: 5240423..5241766 (+)
• Length: 447 a.a.
• NCBI ID: WP_265075353.1
• Uniprot ID: -
• Organism: Pseudomonas corrugata strain B21-061
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	5242413..5243965	5240423..5241766	flank	647

Gene organization within MGE regions

Location: 5240423..5243965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY65_RS22920 (LOY65_22925)	pilR	5240423..5241766 (+)	1344	WP_265075353.1	sigma-54 dependent transcriptional regulator	Regulator
LOY65_RS22925 (LOY65_22930)	-	5241959..5242324 (-)	366	WP_265075354.1	DUF6124 family protein	-
LOY65_RS22930 (LOY65_22935)	-	5242413..5243965 (+)	1553	WP_265075355.1	IS3 family transposase	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 50197.50 Da
• Isoelectric Point: 6.1405

>NTDB_id=715220 LOY65_RS22920 WP_265075353.1 5240423..5241766(+) (pilR) [Pseudomonas corrugata strain B21-061]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSARNLAEARSLLADEAFDLCLTDMRLSDGTGLELVQHIQQRFPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPATVPTTIDRCLLGDSPPMRGVRKQIEKLARSQAP
VYISGESGCGKELVARLIHEQGPRSSQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVAD
LPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPSLRERREDIEPLAN
HMLQRLATSTGNPAARLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAESNGITDTTNPELMRVDNL
EDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1344 bp

>NTDB_id=715220 LOY65_RS22920 WP_265075353.1 5240423..5241766(+) (pilR) [Pseudomonas corrugata strain B21-061]
TTGAATACGCGCTCACGGCAACGGATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CAGGATGAAACTCGATACCCGCAGCGCCAGGAACCTTGCCGAGGCCCGATCCCTGCTGGCGGACGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGTCCGACGGTACCGGCCTGGAACTGGTGCAGCACATCCAACAGCGCTTCCCGCAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCTTTTGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGTCTGCGGGAACTGGTGACCAGCGCCCTGCGCCTGCCGCCGGCCACCGTCCCGACCACCATCG
ATCGCTGCCTGTTGGGCGACTCCCCGCCGATGCGCGGCGTGCGCAAACAGATCGAAAAGCTGGCCCGCAGCCAGGCGCCG
GTTTACATCAGCGGGGAGTCCGGCTGTGGCAAGGAACTGGTGGCACGGCTGATCCACGAACAAGGACCCCGCTCCAGTCA
GGGCTTTGTGCCGGTCAACTGTGGAGCCATTCCGACAGAACTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCAGCT
TCAGCGGTGCCATCGAGGACAAGCCCGGTCTGTTCCAGGCCGCCCACGGTGGCACCCTGTTCCTCGATGAAGTGGCTGAC
CTGCCCCTGGCGATGCAGGTCAAGCTGCTGCGAGCGATCCAGGAAAAGGCCGTGCGCGCCGTTGGCGGCCAGCAGGAGGA
AGTGGTGGATGTCCGCATCCTCTGTGCCACCCATAAGGATCTGGACGGCGAAGTCGCCGCCGGACGCTTTCGCCAGGATC
TGTACTATCGACTGAACGTCATCGAACTCCGCGTCCCGTCCCTGCGCGAGCGTCGCGAAGACATCGAACCGTTGGCCAAC
CACATGCTCCAGCGCCTGGCGACCAGCACCGGCAACCCCGCCGCCAGACTCCATCCCCAAGCCCTCGAGGCCCTTCGAAA
CTACCGCTTCCCCGGCAACGTGCGAGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTCTGCGAACACCAACAGATCG
AAGCCGACGACCTGCGCCTGGCCGAAAGCAATGGCATCACCGACACCACCAACCCCGAGTTGATGCGGGTCGACAACCTG
GAAGACTATCTGGAGGACGTCGAACGCAAGGTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACCGCCGCAGC
GCAGCGATTGAAGCTGTCATTTCGGTCAATGCGGTATCGGTTGAAGAAATTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.505	99.329	0.79
pilR	Acinetobacter baumannii strain A118	49.02	100	0.503