Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | LOY65_RS22825 | Genome accession | NZ_CP102175 |
| Coordinates | 5224832..5225701 (+) | Length | 289 a.a. |
| NCBI ID | WP_024779580.1 | Uniprot ID | A0A3M3EEJ7 |
| Organism | Pseudomonas corrugata strain B21-061 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5219832..5230701
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY65_RS22800 (LOY65_22805) | - | 5220013..5220309 (+) | 297 | WP_053192127.1 | DUF2845 domain-containing protein | - |
| LOY65_RS22805 (LOY65_22810) | - | 5220613..5220966 (-) | 354 | WP_024779584.1 | BON domain-containing protein | - |
| LOY65_RS22810 (LOY65_22815) | - | 5221264..5221686 (-) | 423 | WP_024779583.1 | pilin | - |
| LOY65_RS22815 (LOY65_22820) | pilB | 5221910..5223610 (+) | 1701 | WP_053192129.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LOY65_RS22820 (LOY65_22825) | pilC | 5223613..5224830 (+) | 1218 | WP_024779581.1 | type II secretion system F family protein | Machinery gene |
| LOY65_RS22825 (LOY65_22830) | pilD | 5224832..5225701 (+) | 870 | WP_024779580.1 | A24 family peptidase | Machinery gene |
| LOY65_RS22830 (LOY65_22835) | coaE | 5225712..5226335 (+) | 624 | WP_024779579.1 | dephospho-CoA kinase | - |
| LOY65_RS22835 (LOY65_22840) | yacG | 5226332..5226538 (+) | 207 | WP_024779578.1 | DNA gyrase inhibitor YacG | - |
| LOY65_RS22840 (LOY65_22845) | - | 5226543..5226758 (-) | 216 | WP_024779577.1 | hypothetical protein | - |
| LOY65_RS22845 (LOY65_22850) | - | 5226822..5227508 (-) | 687 | WP_024779576.1 | energy-coupling factor ABC transporter permease | - |
| LOY65_RS22850 (LOY65_22855) | - | 5227843..5228469 (+) | 627 | WP_024779575.1 | DUF1780 domain-containing protein | - |
| LOY65_RS22855 (LOY65_22860) | - | 5228568..5228741 (+) | 174 | WP_003185543.1 | DUF3094 domain-containing protein | - |
| LOY65_RS22860 (LOY65_22865) | - | 5228823..5230121 (+) | 1299 | WP_024779574.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31780.93 Da Isoelectric Point: 8.6210
>NTDB_id=715218 LOY65_RS22825 WP_024779580.1 5224832..5225701(+) (pilD) [Pseudomonas corrugata strain B21-061]
MPLTGFFILYPLAFVLTALLLGLIVGSFLNVLVWRLPKMLTREWRLQAHDLLGLPAETPGPAYNLMLPHSHCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACAALSAFVAWHFGFGWQAALVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAVWGAVAGYLALWSVFWIFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVVVLRMRSAPASTQIPFGPYLAIAGWIALLWGGQITDFYWHSVGF
MPLTGFFILYPLAFVLTALLLGLIVGSFLNVLVWRLPKMLTREWRLQAHDLLGLPAETPGPAYNLMLPHSHCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACAALSAFVAWHFGFGWQAALVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAVWGAVAGYLALWSVFWIFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVVVLRMRSAPASTQIPFGPYLAIAGWIALLWGGQITDFYWHSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=715218 LOY65_RS22825 WP_024779580.1 5224832..5225701(+) (pilD) [Pseudomonas corrugata strain B21-061]
ATGCCCCTGACCGGATTCTTCATCCTTTATCCCCTGGCCTTTGTGCTGACCGCACTTTTGCTCGGGCTGATCGTCGGCAG
CTTCCTCAATGTCCTGGTGTGGCGGTTGCCCAAGATGCTCACCCGGGAATGGCGGCTGCAAGCCCACGACCTGCTGGGCC
TGCCCGCCGAAACACCCGGCCCGGCCTACAACCTGATGCTGCCTCACTCCCATTGCCCTCACTGCGGCCACCGCATCCGG
GCCTGGGAAAATATCCCATTGCTCAGTTACCTCGCACTGCGTGGTCGCTGTTCCAGTTGCGCGGCCCCCATTGGGCGACG
GTATCCCCTGACCGAGCTGGCCTGCGCTGCGCTGTCGGCCTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCGC
TGGTGATGGTCCTAAGCTGGGGCCTGCTGGGCATGAGTCTGATCGATGCGGAGCATCAGCTACTGCCCGATACACTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGCTTCGGGCTGTTCGTCTCGTTGAACCAGGCGGTATGGGGAGCGGT
GGCCGGCTATCTCGCGCTGTGGTCGGTATTCTGGATCTTCAAGTTGATCACCGGCAAGGAAGGCATGGGCTACGGAGACT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGCGGCTGGCAAATTCTGCCGCTGACGCTGCTGCTATCGTCGCTGGTGGGC
GCCGTGATCGGAGTCGTTGTGTTGCGCATGCGAAGTGCCCCGGCTTCGACGCAGATCCCCTTCGGGCCCTATTTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCACTCTGTCGGTTTCTAA
ATGCCCCTGACCGGATTCTTCATCCTTTATCCCCTGGCCTTTGTGCTGACCGCACTTTTGCTCGGGCTGATCGTCGGCAG
CTTCCTCAATGTCCTGGTGTGGCGGTTGCCCAAGATGCTCACCCGGGAATGGCGGCTGCAAGCCCACGACCTGCTGGGCC
TGCCCGCCGAAACACCCGGCCCGGCCTACAACCTGATGCTGCCTCACTCCCATTGCCCTCACTGCGGCCACCGCATCCGG
GCCTGGGAAAATATCCCATTGCTCAGTTACCTCGCACTGCGTGGTCGCTGTTCCAGTTGCGCGGCCCCCATTGGGCGACG
GTATCCCCTGACCGAGCTGGCCTGCGCTGCGCTGTCGGCCTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCGC
TGGTGATGGTCCTAAGCTGGGGCCTGCTGGGCATGAGTCTGATCGATGCGGAGCATCAGCTACTGCCCGATACACTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGCTTCGGGCTGTTCGTCTCGTTGAACCAGGCGGTATGGGGAGCGGT
GGCCGGCTATCTCGCGCTGTGGTCGGTATTCTGGATCTTCAAGTTGATCACCGGCAAGGAAGGCATGGGCTACGGAGACT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGCGGCTGGCAAATTCTGCCGCTGACGCTGCTGCTATCGTCGCTGGTGGGC
GCCGTGATCGGAGTCGTTGTGTTGCGCATGCGAAGTGCCCCGGCTTCGACGCAGATCCCCTTCGGGCCCTATTTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCACTCTGTCGGTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.901 |
97.578 |
0.526 |
| pilD | Vibrio campbellii strain DS40M4 |
50.53 |
97.924 |
0.495 |
| pilD | Neisseria gonorrhoeae MS11 |
46.341 |
99.308 |
0.46 |
| pilD | Acinetobacter nosocomialis M2 |
46.479 |
98.27 |
0.457 |
| pilD | Acinetobacter baumannii D1279779 |
46.479 |
98.27 |
0.457 |