Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY65_RS19055 Genome accession   NZ_CP102175
Coordinates   4397691..4398326 (-) Length   211 a.a.
NCBI ID   WP_162164403.1    Uniprot ID   -
Organism   Pseudomonas corrugata strain B21-061     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4392691..4403326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY65_RS19020 (LOY65_19025) - 4393070..4393540 (-) 471 WP_024776917.1 (2Fe-2S)-binding protein -
  LOY65_RS19025 (LOY65_19030) murB 4393806..4394825 (-) 1020 WP_265075224.1 UDP-N-acetylmuramate dehydrogenase -
  LOY65_RS19030 (LOY65_19035) - 4394822..4395286 (-) 465 WP_265075225.1 low molecular weight protein-tyrosine-phosphatase -
  LOY65_RS19035 (LOY65_19040) kdsB 4395286..4396050 (-) 765 WP_053190745.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY65_RS19040 (LOY65_19045) - 4396047..4396232 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY65_RS19045 (LOY65_19050) lpxK 4396256..4397266 (-) 1011 WP_024776921.1 tetraacyldisaccharide 4'-kinase -
  LOY65_RS19050 (LOY65_19055) - 4397266..4397694 (-) 429 WP_024776922.1 biopolymer transporter ExbD -
  LOY65_RS19055 (LOY65_19060) exbB 4397691..4398326 (-) 636 WP_162164403.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY65_RS19060 (LOY65_19065) comA 4398521..4400755 (-) 2235 WP_053190742.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY65_RS19065 (LOY65_19070) - 4400901..4401416 (+) 516 WP_024776925.1 DUF2062 domain-containing protein -
  LOY65_RS19070 (LOY65_19075) - 4401557..4402336 (-) 780 WP_024776926.1 ABC transporter permease -
  LOY65_RS19075 (LOY65_19080) - 4402333..4403265 (-) 933 WP_024776927.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22798.83 Da        Isoelectric Point: 8.0840

>NTDB_id=715213 LOY65_RS19055 WP_162164403.1 4397691..4398326(-) (exbB) [Pseudomonas corrugata strain B21-061]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRSSSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGVSTNASALAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGSKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=715213 LOY65_RS19055 WP_162164403.1 4397691..4398326(-) (exbB) [Pseudomonas corrugata strain B21-061]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTTAACAAGGACAAGCTCAAGGAGCTGCGGTCCAGTTCGCCATTGGGCGAGATCCTGGCGGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATAGAGGAAGCCGCGGCCCGGGTCATCCATGAGCTGGAGCGCTACAT
CAATGCCCTGGGTACCATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTTACCGGATCCGGCGTAAGTACCAATGCCTCGGCGTTGGCCGGTGGTATCTCCAAAGCCTTGATCACCACCGCC
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCATCGGTTCCTGCAGCGCCGCGTCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTCGAGGTGGTGCAGGGCGATCGTGACGTGGACCTGGCCGGGAGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844