Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexB   Type   Machinery gene
Locus tag   M0P24_RS06570 Genome accession   NZ_CP116957
Coordinates   1308422..1311664 (-) Length   1080 a.a.
NCBI ID   WP_248497773.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1303422..1316664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS06565 (M0P24_06565) rexA 1304800..1308432 (-) 3633 WP_248497774.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  M0P24_RS06570 (M0P24_06570) rexB 1308422..1311664 (-) 3243 WP_248497773.1 ATP-dependent nuclease subunit B Machinery gene
  M0P24_RS06575 (M0P24_06575) pheT 1311814..1314219 (-) 2406 WP_248497771.1 phenylalanine--tRNA ligase subunit beta -
  M0P24_RS06580 (M0P24_06580) - 1314290..1314782 (-) 493 Protein_1311 GNAT family N-acetyltransferase -
  M0P24_RS06585 (M0P24_06585) pheS 1314818..1315861 (-) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -

Sequence


Protein


Download         Length: 1080 a.a.        Molecular weight: 124113.57 Da        Isoelectric Point: 5.1310

>NTDB_id=715153 M0P24_RS06570 WP_248497773.1 1308422..1311664(-) (rexB) [Streptococcus pasteurianus strain WUSP070]
MKLLYTDIQYDMTEILVGEAVAQAEAGKRVFYIAPNSLSFEKERAVLELLRDEASFAITVTRFAQMARYFVLNEAQVKES
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLNLAELHSAEKQEDLVKIFLAVNDILLA
NQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVSLLEEKCAQVIIGTYSSQKAYRAAFSTGNIYQAS
LDFLRGLAAKFHAQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQKEEVEHVAKAIRHKLY
QGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGLYGNFKQ
EDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSSLLEKLMTFLHAIHLPDNL
EGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNK
FVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDT
ESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIEL
PLIKDNMQTKTVSADVIEARFPSDEPILLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDD
SNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTATILRDDAQIQVESEEETFELMIANSVRIRGIID
RVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLSESEHIFGAMYLHMQEPKVDLSSVATTEKILE
NLAKELTYRGLFLEDEKAYLANGRYHLNDSLYSQEELEILLAYNQNLYLKAAEQIKKGHFLINPYSEDGKSVQGDQLKAI
TRFEADRHMTYARKWYKLPRKDRRQGFLSLMQEEEETDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=715153 M0P24_RS06570 WP_248497773.1 1308422..1311664(-) (rexB) [Streptococcus pasteurianus strain WUSP070]
ATGAAATTACTATACACAGATATTCAGTATGATATGACTGAAATTTTAGTTGGAGAGGCAGTAGCTCAGGCAGAAGCTGG
TAAGCGTGTTTTTTACATTGCTCCCAACTCTTTATCTTTTGAAAAAGAAAGAGCAGTTTTGGAGTTGTTACGAGACGAAG
CTTCTTTTGCGATTACGGTAACACGTTTTGCTCAAATGGCTCGTTATTTTGTGTTAAATGAAGCGCAGGTCAAGGAAAGC
ATTGATGACAATGGCTTGGCTATGATTTTTTACCGTGCTTTGTCACATTTTTCAGATACAGATTTGAAAGTTTTTGGGCG
TTTGAAGCAGGATACGAATTTTATCAAGCAGTTGGTTGATTTATACAAAGAATTAAAAACGGCTAACATGACTGTGCTTA
ATTTGGCAGAATTGCATTCAGCGGAGAAGCAGGAAGATTTGGTGAAAATCTTTTTAGCGGTTAATGATATTTTGCTTGCC
AATCAGTATGATAATCAGAGCAAGATTGCTTATTTTGCAAAGCAGGTTGAGGCAGGACATTTGGATGCTACGCTTGAAAA
TGTGAGCCTTGTCATTGACGGTTTTACACGCTTTTCAGCAGAAGAAGAGTATCTAGTAAGCTTGCTTGAAGAAAAATGTG
CGCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCGTATAGAGCGGCATTTTCGACGGGAAATATTTACCAAGCGAGT
TTAGATTTCTTGCGTGGTTTAGCGGCTAAATTCCATGCGCAACCGCAGTATGTTGAAAGTTCTCAGAAATCTCACGAGGC
TTTTTCAAAATTATCAAAATTATTTGAAGCAAAGCACGACTTTACGAGTTCAGATGTGACGCTGACGGCTGATGATAAAA
AACATTACGCTATTTGGGATGTCATTAATCAGAAAGAAGAGGTCGAGCATGTGGCAAAAGCTATTCGTCATAAGCTTTAT
CAAGGGTATCGTTACAAGGATATTTTAGTGCTCTTAGGTGATGTGGACAGCTATCGTTTGCAAATTGGCAAGATTTTTGA
CAAATATGACATTCCTTATTATTTCGGAAAAGCGGAGTCAATGAGTGACCACCCTTTGGTGCATTTTATTGATTCGTTGG
AGCGTGTGAAGCGTTATCGTTTTCGTACCGAAGATGTTGTTAATCTGTTAAAAACAGGGCTTTATGGAAATTTCAAGCAA
GAAGATTTAGACCTTTTTGAGCAATATTTGATTTATGCTGATATTAAGGGACAAAGCAAATTTGCCAAGGAATTCACGAT
TGTTTATAAAGGAAAAAAACATTTAGCCTTTGTTAATCGCATGCGCGAGCAAATCATGACGCCTTTACTTGCTTTATTTA
AGGCGCAAAAGCAACGTGGCTCTAGTTTGCTTGAGAAATTAATGACATTTTTACACGCCATTCATTTGCCTGATAATCTA
GAAGGCATGGTAGCGACTTTTTCAGAAAATGAACAAGAAAAGCATGAGCAAGTTTGGCGGACATTTACAGGTATTTTAAC
GCAATTTCAAACGATTTTTGGGCAAGAAAAGTTATCGCTGGATGACTGTTTGTCCTTGATTCGCAGCGGAATGTTAGCTG
CGCAGTACCGTGTAGTGCCTGCAACGGTTGATGTTGTTTCGGTCAAATCTTATGATTTGGTGGAACCGCACACCAATAAA
TTTGTCTTTGCTTTGGGCATGACGCAGGCACATTTTCCAAAAATTGCGCAAAATAGTAGTCTGATTTCAGATGAAGAACG
TGCCCAAATCAACGAATCAACTGATGATAATCAACGTTTTGATATTGTTAGTCGCGAAAATATCAAGAAAAATCATTTTG
CTGCCCTATCGTTATTTAACTCGGCGACAGAAGAATTGGTGCTTAGTCTGCCACAAATTGCCAACGAAGCCGAAGATACG
GAATCTTCTTACTTAACCGAATTAGCTAGCTTTGGTGTGCCAGTTCTTGCTAAAGGTCGTAATCGTTTGTCAACGGATGC
CGAGGACATTGGTAATTATAAGGCCTTATTGTCTCGTGTGATTGAAGTCAATCGTTTGGCGATTGAAGAAGAGCGTGAAC
TTAGCAAGGAAGAGCAAACTTTCTGGTCAGTTGCTGTTCGTTATCTTCGAAAAAAATTGGCAGCAGAAGGCATTGAATTG
CCGCTGATTAAGGATAATATGCAAACTAAGACGGTCTCTGCCGACGTGATTGAGGCACGTTTTCCAAGTGATGAGCCGAT
TTTGTTATCATCATCTGCAGTCACTACCTTCTACAATAATCAGTATAAATATTTCTTGCAATATGTTCTTGGCTTGCAAG
AGGTTGAGACGATTCACCCAGATGCCAGAAATCATGGTACCTACCTGCATCGTGTTTTTGAATTGGTCATGAAAGATGAT
TCAAACCATTCTTTTGATAGCAAACTTGATAAAGCTATTCAAACAACGAATTTGGAAGACGATTTCAAATTTGTTTACGA
AGAAGATGAAGAAAGTCGTTATTCTTTGACTGTCTTGGAAGATATTGCTAGAAGTACAGCAACGATTTTACGTGATGATG
CTCAGATTCAAGTTGAAAGTGAAGAAGAAACGTTTGAATTAATGATTGCAAATAGTGTTCGTATCAGAGGAATTATTGAC
CGTGTTGACCGCTTATCAGACGGCAGTCTTGGCATTGTGGATTACAAATCAAGTCGCAATACTTTTGATATTCAGAAATT
CTACAATGGTTTAAGTCCGCAATTGGTGACTTATGTGCAAGCTTTGCGTGATAAAAAAGGCTTGAGCGAGTCAGAGCATA
TTTTTGGTGCTATGTATTTGCATATGCAAGAGCCAAAAGTTGATTTGTCATCGGTGGCTACAACAGAGAAAATTTTAGAA
AATTTGGCTAAAGAGTTGACTTATCGTGGTCTATTCTTGGAAGATGAAAAAGCGTATTTAGCCAATGGTCGATATCATCT
GAATGATTCGCTTTACAGTCAAGAAGAACTTGAGATTTTGCTAGCTTATAATCAAAACTTATATCTGAAAGCAGCAGAGC
AGATTAAGAAAGGGCATTTCTTGATTAATCCTTATAGTGAGGACGGCAAGTCAGTTCAAGGAGACCAATTGAAGGCAATC
ACACGATTTGAGGCTGACCGCCATATGACTTATGCTCGCAAATGGTATAAATTACCAAGAAAAGATAGACGTCAAGGCTT
TTTGAGCCTAATGCAAGAAGAGGAGGAAACAGATGATCTTTAA

Domains


Predicted by InterProScan.

(749-1026)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.074

100

0.441