Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   M0P24_RS06565 Genome accession   NZ_CP116957
Coordinates   1304800..1308432 (-) Length   1210 a.a.
NCBI ID   WP_248497774.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1299800..1313432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS06560 (M0P24_06560) - 1300938..1304660 (-) 3723 WP_248497775.1 hypothetical protein -
  M0P24_RS06565 (M0P24_06565) rexA 1304800..1308432 (-) 3633 WP_248497774.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  M0P24_RS06570 (M0P24_06570) rexB 1308422..1311664 (-) 3243 WP_248497773.1 ATP-dependent nuclease subunit B Machinery gene

Sequence


Protein


Download         Length: 1210 a.a.        Molecular weight: 138699.45 Da        Isoelectric Point: 4.8954

>NTDB_id=715152 M0P24_RS06565 WP_248497774.1 1304800..1308432(-) (rexA) [Streptococcus pasteurianus strain WUSP070]
MIFKPFLTSEDISSLQIQEAQSSKKQKRTPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFT
VKAAGELKERIEKKISQALQETTDNDLKNYLNEQLLGLQTADIGTMDAFTQKLVNQYGYTLGISPTFRIMTDKSEQDILK
NEIFFDLFSDYMTGNNAELFRQLVRNFSGNRKDSTAFRGIVYKIYDFSQATDNPQKWLAEVFLKGAKTYTDFSAIPDQEV
TDFLTCLHDTADQLQDVTDLEDYKQKTAKGTPTANYKKHLNIIEHLREWAQHFETLYGRDGLGRLATDVAKLLPAGPAVT
VAGTKYPVFKTLQGRLTGLKHLETIFKYQPESLPLLELLQAFMQDFSEQYLQAKIQENAFEFSDIAHFAIQILEENADIR
ELYQNKYHEVMVDEYQDNNHTQERMLELLSNGNNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPDHGKLILLKENFR
SQSEVLDATNSIFTHLMDEAVGEILYDDTHQLVAGSPAQKESHPENKTQVLIYDIDNNSDLPSDAEEGQINPNEVKLVAK
EIIRLHNEEHVAFENITLLVSSRTRNDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLNDYALVALMRS
PMFSFNEDELARLALQTTEDDHRANLYQKLEHALAGKGSHNELITIALYDKLTDFMACFVAWREFAKWHALYDLIWKIYN
DRFYYDYVGNLPRAEQRQSNLYALALRANNFERTGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLE
FKYVFILNIDKKFSIQDLMSPLILSRQNGAGIKYLADMKEELETDVFPTVKVSMDTLPYQLNKRELRLATLSEQMRLFYV
AMTRAEKKLYLVGKASSEKLVDKYSGKSENNHLPVAERENFMTFQDWVLAIYEAYSKENLPFAVDFVTDEDLTDDKIGKI
EVTSVITPDDLTDNRQSENITEAVDRLEAVEKLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVDVMTKAYQAQPTFEL
PDFSKKAKIEATAIGSAMHELMQRIPLSKQVMIADITAALAQVSAEDEVKARIRLENVLAFFENSELGQLIQQHTDKIYR
EAPFAMLKEDPDSKEKFVVRGIVDGYLVLDDRIVLFDYKTDKYKNSEEIKERYQGQMALYAEALSKSYDRKNVDKYLVLL
GGEQLEVVKL

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=715152 M0P24_RS06565 WP_248497774.1 1304800..1308432(-) (rexA) [Streptococcus pasteurianus strain WUSP070]
ATGATCTTTAAACCATTTCTAACGTCAGAAGACATTTCTTCTCTACAAATCCAAGAAGCACAGTCATCCAAAAAACAAAA
ACGCACGCCAGAACAAATCGAAGCTATTTATAGTTATGGCAATAATATTTTGGTGTCTGCATCGGCTGGTTCTGGGAAAA
CCTTTGTCATGGTTGAACGCATTATTGATAAAATTTTGCGTGGTGTGACGATTGACCAGCTATTCATTTCAACCTTCACG
GTCAAGGCTGCTGGGGAATTAAAAGAGCGTATTGAGAAGAAAATTAGCCAAGCTCTGCAAGAAACGACTGACAATGATTT
GAAAAATTATCTCAATGAGCAGTTGCTGGGCTTACAGACAGCTGATATTGGAACCATGGATGCTTTTACGCAGAAATTGG
TCAATCAATACGGCTACACACTGGGAATTTCACCAACTTTCCGTATTATGACGGATAAGAGTGAGCAAGATATTTTGAAA
AATGAAATCTTTTTTGACCTTTTTTCTGATTACATGACAGGAAATAATGCTGAGCTTTTTCGTCAATTAGTGCGGAATTT
TTCTGGTAATCGTAAGGATAGCACCGCTTTTAGAGGCATTGTTTATAAAATTTATGATTTTAGTCAAGCAACCGATAATC
CACAGAAGTGGTTGGCAGAAGTATTTTTAAAAGGTGCTAAAACTTATACCGATTTTTCAGCAATTCCTGACCAAGAAGTC
ACGGATTTTCTGACTTGCTTGCATGATACGGCTGACCAGTTGCAAGATGTGACTGATTTAGAAGACTACAAGCAAAAAAC
AGCCAAAGGAACACCCACAGCCAATTATAAAAAGCATTTGAATATCATTGAGCATTTGCGTGAATGGGCACAGCATTTTG
AAACTCTTTATGGTCGTGACGGACTTGGACGGTTGGCGACAGATGTGGCGAAATTGCTTCCAGCTGGTCCTGCTGTGACA
GTTGCAGGAACGAAATATCCCGTCTTTAAAACCTTACAGGGGCGTTTGACTGGTTTGAAACATTTGGAAACCATTTTTAA
ATACCAGCCAGAAAGCCTTCCGTTGCTAGAGCTATTGCAGGCATTTATGCAAGATTTTTCAGAGCAATATTTGCAAGCGA
AAATCCAAGAAAATGCTTTTGAATTTTCGGATATTGCCCATTTTGCCATTCAGATTTTGGAAGAAAACGCTGATATTCGT
GAACTTTATCAGAATAAGTATCACGAAGTCATGGTCGATGAGTACCAAGATAATAACCACACGCAAGAACGCATGTTGGA
GTTGTTGTCGAATGGTAATAATCGGTTTATGGTAGGGGATATCAAGCAATCCATTTACCGCTTCCGTCAAGCCGACCCAC
AGATTTTTAACCAAAAATTTAAAGATTTTCAAGAACATCCTGACCATGGGAAATTAATTTTGTTAAAAGAGAATTTCCGT
AGTCAGTCAGAAGTTTTAGATGCGACAAACAGTATTTTTACGCATTTAATGGACGAGGCTGTTGGTGAGATTTTGTACGA
TGACACACATCAATTGGTCGCTGGAAGCCCTGCTCAAAAGGAAAGTCACCCAGAAAATAAAACGCAAGTGCTTATCTACG
ACATTGATAACAATAGTGACTTGCCAAGTGATGCCGAAGAAGGACAAATCAACCCTAACGAAGTCAAGTTAGTGGCTAAA
GAAATCATTCGTTTGCACAATGAGGAACACGTTGCTTTCGAGAATATTACCTTGTTGGTCTCATCACGCACGCGTAACGA
CGGTATTTTACAAACCTTTGAACACTATGGTATTCCTTTGGTGACTGACGGTGGTGAGCAAAATTACCTTAAATCAGTCG
AAGTCATGGTTATGCTTGACACGCTTCGCGCCCTTGATAATCCGCTCAATGACTATGCCTTAGTGGCACTCATGCGTTCA
CCGATGTTTTCATTCAATGAAGATGAGCTGGCACGCCTTGCGCTACAAACAACAGAAGATGACCATAGAGCTAATTTGTA
TCAAAAATTGGAGCATGCTTTAGCTGGCAAAGGAAGTCATAATGAATTGATAACAATCGCTTTATATGATAAATTGACTG
ATTTTATGGCTTGTTTTGTTGCTTGGCGTGAATTTGCCAAATGGCATGCGCTTTATGACTTGATTTGGAAAATTTACAAC
GACAGATTTTACTATGATTACGTGGGCAATTTACCACGTGCTGAGCAACGTCAATCGAATTTATATGCTTTAGCTCTTCG
TGCCAATAATTTTGAACGAACTGGTTTTAAAGGACTCTCACGATTTATTCGCATGATTGATAAGGTATTAGAAAGTGAGA
ATGATCTTGCGGACGTTGAGGTGGCTCTGCCTAAAAATGCGGTGAACTTGATGACTATTCATAAAAGTAAAGGTCTCGAG
TTCAAGTATGTTTTCATTTTGAATATTGACAAGAAATTTAGTATTCAGGATTTGATGTCACCCTTGATTTTATCACGTCA
AAATGGTGCAGGTATCAAGTATCTAGCTGATATGAAAGAAGAGTTGGAAACGGACGTTTTCCCAACAGTCAAGGTTAGCA
TGGATACCTTGCCTTACCAGCTCAATAAGCGTGAATTGCGCTTAGCTACGCTTTCAGAACAAATGCGATTGTTTTACGTT
GCCATGACCCGCGCAGAAAAGAAATTGTATTTGGTCGGAAAAGCAAGCTCCGAAAAGTTAGTGGATAAATATAGCGGTAA
ATCAGAAAACAATCATTTGCCAGTGGCAGAACGTGAGAATTTCATGACCTTTCAAGATTGGGTGTTAGCCATTTATGAGG
CTTATAGCAAGGAGAACTTGCCTTTTGCCGTTGATTTTGTCACGGACGAAGATTTGACAGATGATAAGATTGGTAAAATT
GAAGTCACTTCTGTGATAACGCCAGATGATTTGACAGATAACCGCCAATCTGAAAATATCACGGAAGCCGTGGATAGATT
GGAAGCGGTCGAAAAGTTAAATGCGAAGTACCACGCAGCCATCAATTTGCCAAGTTTGAGAACGCCAAGTCAGGTCAAAA
AACTCTATGAGCCAGTTATGGATACTGACGGTGTTGACGTGATGACAAAAGCCTATCAAGCACAACCAACATTTGAATTA
CCAGATTTTTCGAAGAAAGCCAAAATTGAAGCGACAGCCATTGGTTCGGCAATGCATGAACTCATGCAACGTATTCCTCT
ATCAAAACAGGTGATGATAGCCGATATTACCGCGGCGTTAGCCCAAGTTTCGGCAGAAGATGAGGTGAAAGCACGTATTC
GTTTGGAAAATGTCCTAGCCTTTTTTGAAAATTCAGAGCTCGGTCAGTTGATTCAGCAACATACGGACAAGATTTATCGT
GAAGCACCTTTTGCCATGTTAAAAGAGGACCCTGACAGTAAGGAAAAATTCGTTGTCCGTGGGATTGTCGATGGTTACCT
TGTCTTAGATGACCGCATCGTACTCTTTGATTACAAGACTGATAAATACAAAAATAGCGAGGAAATCAAGGAACGCTATC
AAGGACAAATGGCTTTATATGCAGAAGCTCTCAGCAAGTCTTATGATAGAAAAAACGTTGATAAATACCTCGTTTTGCTT
GGTGGCGAACAGCTAGAAGTTGTTAAACTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.431

100

0.535