Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   M0P24_RS05890 Genome accession   NZ_CP116957
Coordinates   1165194..1166993 (-) Length   599 a.a.
NCBI ID   WP_058692838.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1160194..1171993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS05870 (M0P24_05870) pepV 1160654..1162060 (-) 1407 WP_013851727.1 dipeptidase PepV -
  M0P24_RS05875 (M0P24_05875) - 1162221..1162823 (-) 603 WP_003064446.1 nitroreductase family protein -
  M0P24_RS05880 (M0P24_05880) - 1162981..1164711 (-) 1731 WP_058692839.1 hypothetical protein -
  M0P24_RS05885 (M0P24_05885) - 1164873..1165207 (-) 335 Protein_1173 ACT domain-containing protein -
  M0P24_RS05890 (M0P24_05890) uvrC 1165194..1166993 (-) 1800 WP_058692838.1 excinuclease ABC subunit UvrC Machinery gene
  M0P24_RS05895 (M0P24_05895) - 1167413..1168789 (-) 1377 WP_041973959.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  M0P24_RS05900 (M0P24_05900) - 1168993..1170018 (-) 1026 WP_003064438.1 YeiH family protein -
  M0P24_RS05905 (M0P24_05905) - 1170119..1170985 (+) 867 WP_003064436.1 LysR family transcriptional regulator -
  M0P24_RS05910 (M0P24_05910) - 1171065..1171736 (+) 672 WP_048791273.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69111.71 Da        Isoelectric Point: 9.1082

>NTDB_id=715147 M0P24_RS05890 WP_058692838.1 1165194..1166993(-) (uvrC) [Streptococcus pasteurianus strain WUSP070]
MNELIKHKLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNTKTELLVSEIEDFEYIVTGSNTEALLLEIN
LIQENMPKYNIKLKDDKSYPFIKITTNEQYPRLMITRQIKKDGAMYFGPYPDSGAATEIKRLLDRIFPFKKCTNPANKVC
FYYHLGQCKAHTICHVDHDYFVDMAHDVKNFLNGQDNKIVDQLKDKMQKASDLMEFERAAEYRDLLQAISTLRTKQRVMS
QDMMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYMGQFYRDNKHFIPKEIFIPKEIDEDLVKA
IVDTKIIKPQRGEKKQLVNLAIKNARMSLQQKFDLLEKDVKKTYGAVENIGELLNIPKPVRIEAFDNSNIQGTSPVAAMV
VFVNGKPSKKDYRKFKVKTVVGPDDYASMREVIYRRYSRVLKDGLVPPDLIIIDGGQGQVNVARDVIENKLGLDIPIAGL
QKNDKHQTHELLFGDPLEVVELPRNSEEFFLLQRIQDEVHRFAITFHRQVRSKNSFSSKLDGIAGLGPKRKQLLMKHFKS
LPNIQKADIDDIVNCGIPRNVATAIKAKLSDEEATNANH

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=715147 M0P24_RS05890 WP_058692838.1 1165194..1166993(-) (uvrC) [Streptococcus pasteurianus strain WUSP070]
ATGAATGAACTGATTAAACATAAACTGGAACTATTGCCAGATAGCCCAGGATGCTATATACACAAGGATAAAAATGGCAC
GATTATTTATGTTGGTAAGGCAAAAAATCTGAAAAATCGTGTGCGTAGCTATTTTCATGGCAGCCATAATACCAAAACAG
AACTTTTGGTTTCAGAAATAGAGGATTTTGAGTATATTGTCACAGGTTCCAATACCGAGGCGTTGCTTCTTGAAATCAAT
CTCATTCAAGAAAATATGCCAAAATACAATATCAAGCTCAAAGATGATAAATCCTATCCTTTCATCAAAATCACAACTAA
TGAGCAGTACCCACGTTTAATGATTACCCGCCAAATCAAAAAAGACGGTGCCATGTATTTTGGACCCTATCCTGACTCAG
GAGCGGCAACGGAAATCAAACGCCTGTTAGACCGCATTTTTCCATTTAAGAAATGTACCAATCCTGCTAATAAAGTTTGT
TTTTATTACCATTTGGGGCAATGTAAAGCACATACGATTTGTCATGTTGACCATGATTATTTTGTTGATATGGCGCACGA
TGTGAAAAATTTCCTTAATGGTCAAGACAATAAAATTGTTGACCAACTTAAAGATAAAATGCAAAAAGCGTCAGATTTAA
TGGAATTTGAACGTGCGGCAGAATATCGCGATTTACTGCAAGCTATCTCAACTTTACGCACGAAACAGCGTGTGATGAGC
CAAGATATGATGGACCGTGATATTTTTGGTTACTACGTTGACAAAGGCTGGATGTGTGTGCAAGTATTTTTTGTTCGCCA
AGGAAAACTCATTCAACGTGATGTTAATATGTTTCCTTATTATAATGACCCAGAAGAAGATTTTTTGACTTACATGGGGC
AATTTTACCGTGACAATAAGCACTTTATTCCCAAAGAAATTTTTATTCCTAAAGAAATTGATGAAGACTTGGTCAAGGCG
ATTGTTGATACGAAAATCATCAAGCCCCAACGTGGTGAGAAGAAGCAGCTTGTTAACCTAGCTATCAAAAATGCACGTAT
GAGTTTGCAACAAAAATTTGATTTGCTTGAAAAAGATGTTAAGAAAACTTATGGCGCTGTTGAAAATATCGGCGAATTGC
TTAACATTCCAAAGCCTGTTCGTATTGAAGCATTTGATAACTCAAATATTCAAGGAACAAGCCCTGTCGCTGCTATGGTG
GTCTTTGTAAATGGAAAACCAAGTAAGAAAGATTATCGAAAATTCAAGGTTAAAACGGTTGTCGGACCAGATGATTATGC
CAGTATGCGCGAGGTCATCTATCGCCGTTATAGCCGTGTGCTGAAAGATGGCTTAGTGCCACCAGATTTGATTATCATCG
ATGGTGGTCAAGGTCAGGTCAATGTGGCGCGTGATGTTATTGAAAATAAACTCGGTCTTGATATTCCAATTGCTGGTCTG
CAAAAAAATGATAAACACCAAACGCACGAATTATTATTTGGTGACCCCTTAGAAGTTGTTGAATTGCCACGAAATTCCGA
AGAATTTTTCTTGTTACAACGTATCCAAGATGAGGTGCACCGTTTTGCTATTACCTTCCACCGTCAAGTGCGTAGTAAAA
ATTCATTCTCATCAAAACTTGATGGCATTGCTGGATTGGGACCAAAGCGCAAGCAATTACTCATGAAGCACTTTAAGAGC
CTACCCAATATTCAAAAGGCTGATATAGACGACATTGTGAACTGTGGTATTCCACGAAATGTCGCGACTGCGATTAAAGC
AAAATTAAGTGATGAGGAAGCGACCAATGCTAACCATTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-524)

UvrB/uvrC motif (UVR)

(198-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

78.136

98.497

0.77
  uvrC Streptococcus pneumoniae R6

77.966

98.497

0.768
  uvrC Streptococcus pneumoniae D39

77.966

98.497

0.768