Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FFK26_RS05995 Genome accession   NZ_AP024130
Coordinates   1215777..1216514 (-) Length   245 a.a.
NCBI ID   WP_137564415.1    Uniprot ID   -
Organism   Escherichia coli strain SI-NP020     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1210777..1221514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFK26_RS05965 (BvCmsSINP020_1177) yfiL 1210935..1211300 (-) 366 WP_001368400.1 DUF2799 domain-containing protein -
  FFK26_RS05970 (BvCmsSINP020_1178) aroF 1211510..1212580 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FFK26_RS05975 (BvCmsSINP020_1179) tyrA 1212591..1213712 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FFK26_RS05980 (BvCmsSINP020_1180) pheA 1213755..1214915 (-) 1161 WP_137564414.1 bifunctional chorismate mutase/prephenate dehydratase -
  FFK26_RS05985 pheL 1215014..1215061 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  FFK26_RS05990 (BvCmsSINP020_1181) raiA 1215165..1215506 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FFK26_RS05995 (BvCmsSINP020_1182) comL 1215777..1216514 (-) 738 WP_137564415.1 outer membrane protein assembly factor BamD Machinery gene
  FFK26_RS06000 (BvCmsSINP020_1183) rluD 1216649..1217629 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FFK26_RS06005 (BvCmsSINP020_1184) yfiH 1217626..1218357 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  FFK26_RS06010 (BvCmsSINP020_1185) clpC 1218487..1221060 (+) 2574 WP_137564416.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27859.42 Da        Isoelectric Point: 6.4874

>NTDB_id=71510 FFK26_RS05995 WP_137564415.1 1215777..1216514(-) (comL) [Escherichia coli strain SI-NP020]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVTEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=71510 FFK26_RS05995 WP_137564415.1 1215777..1216514(-) (comL) [Escherichia coli strain SI-NP020]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGACCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371

Multiple sequence alignment