Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PQH37_RS19095 Genome accession   NZ_CP116948
Coordinates   3849614..3850219 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CUVET21-PYO5     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3844614..3855219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQH37_RS19075 (PQH37_18990) aes 3844768..3845736 (+) 969 WP_000801820.1 acetyl esterase -
  PQH37_RS19080 (PQH37_18995) hemH 3845711..3846673 (-) 963 WP_001250114.1 ferrochelatase -
  PQH37_RS19085 (PQH37_19000) adk 3846805..3847449 (-) 645 WP_001220233.1 adenylate kinase -
  PQH37_RS19090 (PQH37_19005) htpG 3847630..3849504 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PQH37_RS19095 (PQH37_19010) recR 3849614..3850219 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PQH37_RS19100 (PQH37_19015) ybaB 3850219..3850548 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PQH37_RS19105 (PQH37_19020) dnaX 3850601..3852532 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  PQH37_RS19110 (PQH37_19025) apt 3852661..3853212 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PQH37_RS19115 (PQH37_19030) ybaN 3853365..3853742 (-) 378 WP_001188900.1 DUF454 family protein -
  PQH37_RS19120 (PQH37_19035) priC 3853812..3854339 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  PQH37_RS19125 (PQH37_19040) rsmS 3854353..3854514 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=715078 PQH37_RS19095 WP_001195025.1 3849614..3850219(-) (recR) [Escherichia coli strain CUVET21-PYO5]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=715078 PQH37_RS19095 WP_001195025.1 3849614..3850219(-) (recR) [Escherichia coli strain CUVET21-PYO5]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443