Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   NQZ90_RS08270 Genome accession   NZ_CP102148
Coordinates   1681675..1682364 (-) Length   229 a.a.
NCBI ID   WP_002942700.1    Uniprot ID   A0A126UNE5
Organism   Streptococcus suis strain DNC15     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676675..1687364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS08245 (NQZ90_08245) - 1677145..1677858 (-) 714 WP_015647269.1 NADPH-dependent oxidoreductase -
  NQZ90_RS08250 (NQZ90_08250) dnaI 1677855..1678754 (-) 900 WP_014636109.1 primosomal protein DnaI -
  NQZ90_RS08255 (NQZ90_08255) - 1678754..1679905 (-) 1152 WP_257110184.1 replication initiation/membrane attachment protein -
  NQZ90_RS08260 (NQZ90_08260) nrdR 1679892..1680383 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  NQZ90_RS08265 (NQZ90_08265) - 1680455..1681585 (-) 1131 WP_002942701.1 AI-2E family transporter -
  NQZ90_RS08270 (NQZ90_08270) covR 1681675..1682364 (-) 690 WP_002942700.1 DNA-binding response regulator Regulator
  NQZ90_RS08275 (NQZ90_08275) gndA 1682446..1683873 (-) 1428 WP_257110185.1 NADP-dependent phosphogluconate dehydrogenase -
  NQZ90_RS08280 (NQZ90_08280) - 1683970..1684509 (-) 540 WP_014736258.1 DUF177 domain-containing protein -
  NQZ90_RS08285 (NQZ90_08285) trxB 1684519..1685436 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  NQZ90_RS08290 (NQZ90_08290) - 1685450..1685674 (-) 225 WP_014638521.1 DUF4059 family protein -
  NQZ90_RS08295 (NQZ90_08295) - 1685692..1687035 (-) 1344 WP_002936685.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26225.11 Da        Isoelectric Point: 5.3968

>NTDB_id=715019 NQZ90_RS08270 WP_002942700.1 1681675..1682364(-) (covR) [Streptococcus suis strain DNC15]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=715019 NQZ90_RS08270 WP_002942700.1 1681675..1682364(-) (covR) [Streptococcus suis strain DNC15]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTTTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTGCAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGCGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGTCCAGAACCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UNE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432