Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NQZ90_RS03475 Genome accession   NZ_CP102148
Coordinates   713856..715658 (+) Length   600 a.a.
NCBI ID   WP_024389335.1    Uniprot ID   A0A0Z8U7K8
Organism   Streptococcus suis strain DNC15     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 708856..720658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS03450 (NQZ90_03450) - 709282..709875 (-) 594 WP_105155429.1 DUF1361 domain-containing protein -
  NQZ90_RS03455 (NQZ90_03455) metG 710031..712034 (+) 2004 WP_044685961.1 methionine--tRNA ligase -
  NQZ90_RS03460 (NQZ90_03460) coiA 712095..713048 (+) 954 WP_044669863.1 competence protein CoiA Machinery gene
  NQZ90_RS03465 (NQZ90_03465) - 713092..713457 (+) 366 WP_257110357.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NQZ90_RS03470 (NQZ90_03470) HI0659 713447..713746 (+) 300 WP_014637767.1 helix-turn-helix domain-containing protein Machinery gene
  NQZ90_RS03475 (NQZ90_03475) pepF 713856..715658 (+) 1803 WP_024389335.1 oligoendopeptidase F Regulator
  NQZ90_RS03480 (NQZ90_03480) - 715660..716103 (+) 444 WP_024389334.1 hypothetical protein -
  NQZ90_RS03485 (NQZ90_03485) - 716114..716662 (+) 549 WP_024389333.1 DUF6630 family protein -
  NQZ90_RS03490 (NQZ90_03490) - 716737..717456 (+) 720 WP_044669888.1 O-methyltransferase -
  NQZ90_RS03495 (NQZ90_03495) prsA 717518..718501 (+) 984 WP_014637772.1 peptidylprolyl isomerase PrsA -
  NQZ90_RS03500 (NQZ90_03500) - 718865..719350 (+) 486 WP_014637773.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69218.35 Da        Isoelectric Point: 4.5294

>NTDB_id=715006 NQZ90_RS03475 WP_024389335.1 713856..715658(+) (pepF) [Streptococcus suis strain DNC15]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVVAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRQT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELETLVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=715006 NQZ90_RS03475 WP_024389335.1 713856..715658(+) (pepF) [Streptococcus suis strain DNC15]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACCATTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAGCTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAATGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ATAGCCACCAATTTGAAAAGCTTCTGGCAGCCAAGGACCATGTCCTGTCACAAGAGGTAGAAGAAGTCCTTGCGGCGACC
AGCGAGATTTTCGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTAGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAAGTCAAT
AACCTGAAAGCTCGTTTACGGAAGTACGACTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGTGGCAGTCAACAAGCACCTTCCACTCTTGCACCGTTACATTAATTTGCGTAAGAAACTCCTGGGGA
TTGATGATTTGAAAATGTACGATATGTACACACCATTGTCAGATTTTAGTACTAAGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAAGATTACTCTGCTATCGTAAAAGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCACGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACACTCTCTCCATTCTATGTTGACTCGTCAGACG
CAGCCATACGTTTACGGGCATTATTCACTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGTGGCACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACTAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAAGCTGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAGACTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8U7K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697