Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   NQZ91_RS09250 Genome accession   NZ_CP102145
Coordinates   1843187..1843879 (+) Length   230 a.a.
NCBI ID   WP_105111625.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838187..1848879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS09225 (NQZ91_09225) - 1838698..1838922 (+) 225 WP_105122970.1 DUF4059 family protein -
  NQZ91_RS09230 (NQZ91_09230) trxB 1838935..1839852 (+) 918 WP_172062304.1 thioredoxin-disulfide reductase -
  NQZ91_RS09235 (NQZ91_09235) - 1839861..1840394 (+) 534 WP_257117409.1 DUF177 domain-containing protein -
  NQZ91_RS09240 (NQZ91_09240) - 1840482..1841504 (-) 1023 Protein_1795 IS30 family transposase -
  NQZ91_RS09245 (NQZ91_09245) gndA 1841685..1843109 (+) 1425 WP_257117410.1 NADP-dependent phosphogluconate dehydrogenase -
  NQZ91_RS09250 (NQZ91_09250) covR 1843187..1843879 (+) 693 WP_105111625.1 DNA-binding response regulator Regulator
  NQZ91_RS09255 (NQZ91_09255) - 1843953..1845071 (+) 1119 WP_172079609.1 AI-2E family transporter -
  NQZ91_RS09260 (NQZ91_09260) nrdR 1845153..1845644 (+) 492 WP_105110283.1 transcriptional regulator NrdR -
  NQZ91_RS09265 (NQZ91_09265) - 1845631..1846791 (+) 1161 WP_257117411.1 replication initiation/membrane attachment protein -
  NQZ91_RS09270 (NQZ91_09270) dnaI 1846791..1847690 (+) 900 WP_257104834.1 primosomal protein DnaI -
  NQZ91_RS09275 (NQZ91_09275) - 1847687..1848400 (+) 714 Protein_1802 nitroreductase family protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26104.82 Da        Isoelectric Point: 5.0092

>NTDB_id=714967 NQZ91_RS09250 WP_105111625.1 1843187..1843879(+) (covR) [Streptococcus suis strain DNS20]
MAKKILIAGRERNLSHFVSMELQKKDYLVDYASTGQEALSLAHETDFDLILMSFQLSDMSSKELSTQLLAIKPASVLIVA
IDSADVDEHGEEVLSYAVSYVVKPFVISELVEQISAIFRGRDFIDNHCTQVPLQAAYRDLKIDFQNRTVSRGDELINLTR
REYDLLATLMNSPEPVTREQLLERVWKYEATSSETNVVDVYIRYLRGKLDVAGKPSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 693 bp        

>NTDB_id=714967 NQZ91_RS09250 WP_105111625.1 1843187..1843879(+) (covR) [Streptococcus suis strain DNS20]
ATGGCTAAGAAAATTTTGATTGCAGGTCGTGAGCGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAGAAGGACTA
TTTGGTGGACTATGCTTCTACTGGCCAGGAGGCTTTGTCCTTGGCGCATGAGACGGATTTTGATTTGATTCTCATGAGTT
TTCAGCTGTCAGATATGTCCAGTAAGGAATTATCCACGCAGTTATTAGCTATCAAACCTGCATCCGTCCTGATTGTGGCT
ATTGATTCGGCAGATGTGGATGAGCATGGTGAGGAAGTCTTGTCCTATGCGGTTTCCTATGTGGTCAAGCCCTTTGTCAT
CAGCGAATTGGTCGAGCAGATTTCAGCTATTTTCCGTGGTCGGGATTTTATTGACAATCATTGTACTCAGGTTCCCTTGC
AGGCTGCTTATCGAGATTTGAAAATCGATTTTCAAAATCGCACGGTATCCCGTGGAGATGAGCTGATTAACCTGACTCGT
CGAGAGTACGATCTCCTGGCGACACTGATGAATAGTCCTGAGCCTGTCACTCGCGAACAATTGTTAGAGCGGGTTTGGAA
ATACGAGGCGACATCATCGGAAACCAATGTGGTAGATGTCTATATCCGCTATCTGCGTGGGAAATTGGATGTAGCTGGAA
AACCGTCCTATATCAAGACAGTTCGCGGTGTTGGATATGCCATGCGTGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.523

100

0.5
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.156

100

0.443