Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   NQZ91_RS01955 Genome accession   NZ_CP102145
Coordinates   399657..400886 (-) Length   409 a.a.
NCBI ID   WP_257117736.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 394657..405886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS01925 (NQZ91_01925) lsa(E) 394680..396164 (-) 1485 WP_257117734.1 ABC-F type ribosomal protection protein Lsa(E) -
  NQZ91_RS01930 (NQZ91_01930) - 396696..396866 (-) 171 WP_053863315.1 hypothetical protein -
  NQZ91_RS01935 (NQZ91_01935) - 397366..397662 (-) 297 WP_024397634.1 DUF5962 family protein -
  NQZ91_RS01940 (NQZ91_01940) rplL 397858..398223 (-) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  NQZ91_RS01945 (NQZ91_01945) rplJ 398289..398783 (-) 495 WP_002936486.1 50S ribosomal protein L10 -
  NQZ91_RS01950 (NQZ91_01950) yihA 399008..399595 (-) 588 WP_167785535.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NQZ91_RS01955 (NQZ91_01955) clpX 399657..400886 (-) 1230 WP_257117736.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  NQZ91_RS01960 (NQZ91_01960) - 401084..401596 (-) 513 WP_257117738.1 dihydrofolate reductase -
  NQZ91_RS01965 (NQZ91_01965) - 401747..402586 (-) 840 WP_257117739.1 thymidylate synthase -
  NQZ91_RS01970 (NQZ91_01970) - 402639..402941 (-) 303 WP_167785531.1 hypothetical protein -
  NQZ91_RS01975 (NQZ91_01975) - 402954..403232 (-) 279 WP_172073537.1 hypothetical protein -
  NQZ91_RS01980 (NQZ91_01980) - 403359..404747 (-) 1389 WP_257104474.1 glycosyltransferase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45482.96 Da        Isoelectric Point: 4.5705

>NTDB_id=714928 NQZ91_RS01955 WP_257117736.1 399657..400886(-) (clpX) [Streptococcus suis strain DNS20]
MAVKHTHEFIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNHYVIGQDRA
KRALAVAVYNHYKRINFQDTRDDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKDSYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRI
LTEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDDVKRVRVTKAAVDG
KEKPLLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=714928 NQZ91_RS01955 WP_257117736.1 399657..400886(-) (clpX) [Streptococcus suis strain DNS20]
ATGGCTGTTAAGCATACACATGAGTTTATTTATTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
TGGAAACAATGTATTCATCTGTAATGAATGTGTGGAATTAGCTCAGGAAATCATTCGTGAGGAATTGGCAGAAGAAGTGT
TGACTGATTTGGCAGATACGCCAAAACCACAAGAATTGCTCAATATTCTCAACCATTATGTTATCGGACAGGACCGTGCT
AAACGTGCCTTGGCAGTAGCAGTTTACAACCACTACAAGCGCATCAATTTCCAGGATACGCGGGACGATGAGAATGATGT
GGACTTGCAAAAATCTAATATTCTGATGATTGGTCCGACTGGTTCTGGTAAGACTTTCTTGGCCCAAACCTTGGCTAAAA
GTCTCAATGTACCATTTGCCATTGCAGACGCAACTGCTCTTACTGAAGCCGGTTATGTGGGCGAAGACGTTGAAAATATC
CTTCTCAAACTCTTACAGGCTGCAGATTTTAACATTGACCGCGCAGAACGAGGGATTATCTATGTGGATGAAATTGATAA
GATTGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTTTCGGGCGAAGGTGTCCAACAGGCTCTCTTGAAAATCA
TTGAGGGAACAGTTGCCAGCGTGCCACCACAAGGCGGACGCAAGCATCCTAACCAAGAGATGATTCATGTCGATACCAAA
AATATCTTGTTTATCGTAGGTGGGGCCTTTGATGGTATTGAAGAAATTGTTAAACAACGTCTCGGTGAAAAAATCATCGG
TTTCGGTCAAAACAATCGTGCCATTGATGAAAAAGATTCTTACATGCAACACATTATCGCTGATGATATTCAAAAATTTG
GTATCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTTGCAGCTTTAGACCAGTTAACAACCGAGGATTTGGTTCGTATC
TTGACGGAGCCTAAGAATGCACTGGTTAAACAATACCAAACTCTATTGTCTTACGATGATGTCGAGTTGGATTTTGACGA
GGATGCCTTGCTGGCCATTGCTGAGAAGGCGATTGAGCGGAAAACGGGAGCGCGTGGACTTCGTTCTATTATCGAAGAAA
CCATGCTGGATGTCATGTTTGAAGTTCCAGGTCAAGATGATGTCAAACGTGTTCGTGTTACAAAAGCAGCAGTTGATGGT
AAGGAAAAGCCATTGCTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.415

100

0.836
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.561

98.533

0.577