Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   NQZ93_RS08565 Genome accession   NZ_CP102141
Coordinates   1723507..1724196 (-) Length   229 a.a.
NCBI ID   WP_024381695.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR48     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1718507..1729196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS08545 (NQZ93_08545) - 1719279..1720430 (-) 1152 WP_024381692.1 replication initiation/membrane attachment protein -
  NQZ93_RS08550 (NQZ93_08550) nrdR 1720417..1720908 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  NQZ93_RS08555 (NQZ93_08555) - 1720980..1722110 (-) 1131 WP_024381693.1 AI-2E family transporter -
  NQZ93_RS08560 (NQZ93_08560) - 1722339..1722863 (-) 525 WP_015647271.1 hypothetical protein -
  NQZ93_RS08565 (NQZ93_08565) covR 1723507..1724196 (-) 690 WP_024381695.1 DNA-binding response regulator Regulator
  NQZ93_RS08570 (NQZ93_08570) gndA 1724278..1725705 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  NQZ93_RS08575 (NQZ93_08575) - 1725802..1726341 (-) 540 WP_024381696.1 DUF177 domain-containing protein -
  NQZ93_RS08580 (NQZ93_08580) trxB 1726351..1727268 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  NQZ93_RS08585 (NQZ93_08585) - 1727282..1727506 (-) 225 WP_002936682.1 DUF4059 family protein -
  NQZ93_RS08590 (NQZ93_08590) - 1727524..1728867 (-) 1344 WP_024380515.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26239.14 Da        Isoelectric Point: 5.4013

>NTDB_id=714857 NQZ93_RS08565 WP_024381695.1 1723507..1724196(-) (covR) [Streptococcus suis strain DNR48]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISELVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=714857 NQZ93_RS08565 WP_024381695.1 1723507..1724196(-) (covR) [Streptococcus suis strain DNR48]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTGCAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTGGTGAAGCCCTTTGTCAT
CAGTGAGTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.052

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

42.373

100

0.437