Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PP479_RS10575 Genome accession   NZ_CP116935
Coordinates   2213457..2213786 (+) Length   109 a.a.
NCBI ID   WP_023115163.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CUVET18-860     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2208457..2218786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP479_RS10560 (PP479_10560) - 2209257..2210213 (+) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -
  PP479_RS10565 (PP479_10565) - 2210215..2211234 (+) 1020 WP_003158833.1 MraY family glycosyltransferase -
  PP479_RS10570 (PP479_10570) - 2211269..2213266 (+) 1998 WP_023088173.1 polysaccharide biosynthesis protein -
  PP479_RS10575 (PP479_10575) comEA/comE1 2213457..2213786 (+) 330 WP_023115163.1 ComEA family DNA-binding protein Machinery gene
  PP479_RS10585 (PP479_10585) - 2214003..2215199 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  PP479_RS10590 (PP479_10590) uvrB 2215387..2217399 (+) 2013 WP_015502637.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11293.27 Da        Isoelectric Point: 9.1462

>NTDB_id=714802 PP479_RS10575 WP_023115163.1 2213457..2213786(+) (comEA/comE1) [Pseudomonas aeruginosa strain CUVET18-860]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDAAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=714802 PP479_RS10575 WP_023115163.1 2213457..2213786(+) (comEA/comE1) [Pseudomonas aeruginosa strain CUVET18-860]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTAGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
CGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.346

95.413

0.394