Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   NQZ97_RS06430 Genome accession   NZ_CP102136
Coordinates   1284335..1285561 (-) Length   408 a.a.
NCBI ID   WP_002943186.1    Uniprot ID   A0A116M5Y1
Organism   Streptococcus suis strain M105052_S26     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1279335..1290561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS06405 (NQZ97_06405) - 1279774..1279956 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  NQZ97_RS06410 (NQZ97_06410) lepA 1280006..1281838 (-) 1833 WP_014638917.1 translation elongation factor 4 -
  NQZ97_RS06415 (NQZ97_06415) - 1282004..1283134 (-) 1131 WP_257110456.1 ISAs1 family transposase -
  NQZ97_RS06420 (NQZ97_06420) ndk 1283257..1283670 (-) 414 WP_014638916.1 nucleoside-diphosphate kinase -
  NQZ97_RS06425 (NQZ97_06425) yihA 1283693..1284280 (-) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NQZ97_RS06430 (NQZ97_06430) clpX 1284335..1285561 (-) 1227 WP_002943186.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  NQZ97_RS06435 (NQZ97_06435) - 1285583..1285756 (-) 174 WP_014638914.1 hypothetical protein -
  NQZ97_RS06440 (NQZ97_06440) - 1285759..1286271 (-) 513 WP_105154151.1 dihydrofolate reductase -
  NQZ97_RS06445 (NQZ97_06445) - 1286446..1287285 (-) 840 WP_257110457.1 thymidylate synthase -
  NQZ97_RS06450 (NQZ97_06450) - 1287337..1287639 (-) 303 WP_257110458.1 hypothetical protein -
  NQZ97_RS06455 (NQZ97_06455) - 1287651..1287929 (-) 279 WP_024418272.1 hypothetical protein -
  NQZ97_RS06460 (NQZ97_06460) - 1288375..1289334 (-) 960 WP_024380702.1 ROK family glucokinase -
  NQZ97_RS06465 (NQZ97_06465) - 1289428..1289763 (-) 336 WP_023370404.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45352.85 Da        Isoelectric Point: 4.6382

>NTDB_id=714641 NQZ97_RS06430 WP_002943186.1 1284335..1285561(-) (clpX) [Streptococcus suis strain M105052_S26]
MAVKHTHEFIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=714641 NQZ97_RS06430 WP_002943186.1 1284335..1285561(-) (clpX) [Streptococcus suis strain M105052_S26]
ATGGCTGTTAAGCATACACATGAGTTTATTTATTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTAAAAAAAATTATCGC
TGGAAACAATGTGTTTATCTGTAATGAATGTGTGGAATTAGCTCAGGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAT
TGACTGACCTGGCTGACACTCCAAAGCCACAAGAATTACTCAATATTTTAAACAATTATGTCATTGGGCAAGACCGTGCA
AAGCGTGCCTTGGCAGTAGCTGTTTACAACCACTACAAGCGCATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTGATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCAGATGCGACAGCACTAACTGAGGCTGGTTACGTTGGTGAAGACGTGGAAAATATCCTT
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAGGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGTTTGCCTGTATTTGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116M5Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574