Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   NQZ97_RS02630 Genome accession   NZ_CP102136
Coordinates   550163..550852 (+) Length   229 a.a.
NCBI ID   WP_002942700.1    Uniprot ID   A0A126UNE5
Organism   Streptococcus suis strain M105052_S26     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 545163..555852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS02605 (NQZ97_02605) - 545501..546844 (+) 1344 WP_257110661.1 DEAD/DEAH box helicase -
  NQZ97_RS02610 (NQZ97_02610) - 546862..547086 (+) 225 WP_002936682.1 DUF4059 family protein -
  NQZ97_RS02615 (NQZ97_02615) trxB 547100..548017 (+) 918 WP_029175280.1 thioredoxin-disulfide reductase -
  NQZ97_RS02620 (NQZ97_02620) - 548027..548566 (+) 540 WP_029175279.1 DUF177 domain-containing protein -
  NQZ97_RS02625 (NQZ97_02625) gndA 548654..550081 (+) 1428 WP_257110662.1 NADP-dependent phosphogluconate dehydrogenase -
  NQZ97_RS02630 (NQZ97_02630) covR 550163..550852 (+) 690 WP_002942700.1 DNA-binding response regulator Regulator
  NQZ97_RS02635 (NQZ97_02635) - 551268..552398 (+) 1131 WP_043026138.1 AI-2E family transporter -
  NQZ97_RS02640 (NQZ97_02640) nrdR 552470..552961 (+) 492 WP_002938341.1 transcriptional regulator NrdR -
  NQZ97_RS02645 (NQZ97_02645) - 552948..554099 (+) 1152 WP_125177171.1 replication initiation/membrane attachment protein -
  NQZ97_RS02650 (NQZ97_02650) dnaI 554099..554998 (+) 900 WP_043026135.1 primosomal protein DnaI -
  NQZ97_RS02655 (NQZ97_02655) - 554995..555708 (+) 714 WP_257110663.1 NADPH-dependent oxidoreductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26225.11 Da        Isoelectric Point: 5.3968

>NTDB_id=714622 NQZ97_RS02630 WP_002942700.1 550163..550852(+) (covR) [Streptococcus suis strain M105052_S26]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=714622 NQZ97_RS02630 WP_002942700.1 550163..550852(+) (covR) [Streptococcus suis strain M105052_S26]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTGCAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTGGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAGCAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UNE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432