Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   NQZ98_RS08875 Genome accession   NZ_CP102135
Coordinates   1738117..1738806 (-) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1733117..1743806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS08850 (NQZ98_08850) - 1733588..1734301 (-) 714 WP_024399628.1 NADPH-dependent oxidoreductase -
  NQZ98_RS08855 (NQZ98_08855) dnaI 1734298..1735197 (-) 900 WP_002938337.1 primosomal protein DnaI -
  NQZ98_RS08860 (NQZ98_08860) - 1735197..1736348 (-) 1152 WP_024399627.1 replication initiation/membrane attachment protein -
  NQZ98_RS08865 (NQZ98_08865) nrdR 1736335..1736826 (-) 492 WP_024399626.1 transcriptional regulator NrdR -
  NQZ98_RS08870 (NQZ98_08870) - 1736897..1738027 (-) 1131 WP_012027644.1 AI-2E family transporter -
  NQZ98_RS08875 (NQZ98_08875) covR 1738117..1738806 (-) 690 WP_012027645.1 DNA-binding response regulator Regulator
  NQZ98_RS08880 (NQZ98_08880) gndA 1738888..1740315 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  NQZ98_RS08885 (NQZ98_08885) - 1740412..1740951 (-) 540 WP_171997183.1 DUF177 domain-containing protein -
  NQZ98_RS08890 (NQZ98_08890) trxB 1740961..1741878 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  NQZ98_RS08895 (NQZ98_08895) - 1741892..1742116 (-) 225 WP_002936682.1 DUF4059 family protein -
  NQZ98_RS08900 (NQZ98_08900) - 1742134..1743477 (-) 1344 WP_024380515.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=714592 NQZ98_RS08875 WP_012027645.1 1738117..1738806(-) (covR) [Streptococcus suis strain M106471_S40]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=714592 NQZ98_RS08875 WP_012027645.1 1738117..1738806(-) (covR) [Streptococcus suis strain M106471_S40]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTGTTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATTAAAACGGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432