Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FFJ14_RS18690 Genome accession   NZ_AP024126
Coordinates   3849683..3850420 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain NS-NP030     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3844683..3855420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFJ14_RS18675 (BvCmsNSNP030_3685) clpC 3845137..3847710 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FFJ14_RS18680 (BvCmsNSNP030_3686) yfiH 3847840..3848571 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  FFJ14_RS18685 (BvCmsNSNP030_3687) rluD 3848568..3849548 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FFJ14_RS18690 (BvCmsNSNP030_3688) comL 3849683..3850420 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FFJ14_RS18695 (BvCmsNSNP030_3689) raiA 3850691..3851032 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FFJ14_RS18700 pheL 3851136..3851183 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  FFJ14_RS18705 (BvCmsNSNP030_3690) pheA 3851283..3852443 (+) 1161 WP_000200098.1 bifunctional chorismate mutase/prephenate dehydratase -
  FFJ14_RS18710 (BvCmsNSNP030_3691) tyrA 3852486..3853607 (-) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FFJ14_RS18715 (BvCmsNSNP030_3692) aroF 3853618..3854688 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FFJ14_RS18720 (BvCmsNSNP030_3693) yfiL 3854898..3855263 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=71451 FFJ14_RS18690 WP_000197686.1 3849683..3850420(+) (comL) [Escherichia coli strain NS-NP030]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=71451 FFJ14_RS18690 WP_000197686.1 3849683..3850420(+) (comL) [Escherichia coli strain NS-NP030]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment