Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NQU59_RS05495 Genome accession   NZ_CP102099
Coordinates   1147229..1147912 (-) Length   227 a.a.
NCBI ID   WP_257065289.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1142229..1152912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS05460 (NQU59_05460) mlaE 1142645..1143424 (+) 780 WP_005238529.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  NQU59_RS05465 (NQU59_05465) - 1143424..1144101 (+) 678 WP_005238530.1 outer membrane lipid asymmetry maintenance protein MlaD -
  NQU59_RS05470 (NQU59_05470) - 1144121..1144753 (+) 633 WP_257065288.1 phospholipid-binding protein MlaC -
  NQU59_RS05475 (NQU59_05475) - 1144765..1145052 (+) 288 WP_005238532.1 lipid asymmetry maintenance protein MlaB -
  NQU59_RS05480 (NQU59_05480) - 1145101..1146117 (-) 1017 WP_005238533.1 CorA family divalent cation transporter -
  NQU59_RS05485 (NQU59_05485) - 1146285..1146869 (+) 585 WP_043971415.1 TIGR00730 family Rossman fold protein -
  NQU59_RS05490 (NQU59_05490) - 1146880..1147284 (+) 405 WP_005238538.1 NUDIX domain-containing protein -
  NQU59_RS05495 (NQU59_05495) comF 1147229..1147912 (-) 684 WP_257065289.1 ComF family protein Machinery gene
  NQU59_RS05500 (NQU59_05500) recG 1147905..1149950 (-) 2046 WP_257065290.1 ATP-dependent DNA helicase RecG -
  NQU59_RS05505 (NQU59_05505) - 1149969..1150787 (+) 819 WP_005238542.1 NAD-dependent epimerase/dehydratase family protein -
  NQU59_RS05510 (NQU59_05510) - 1150913..1151896 (+) 984 WP_005238544.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26068.24 Da        Isoelectric Point: 9.4915

>NTDB_id=714404 NQU59_RS05495 WP_257065289.1 1147229..1147912(-) (comF) [Acinetobacter colistiniresistens strain C-214]
MFKRLRTSTQQLLDYFTPCSLCDIGIKRHFGVCQSCWQQLPWLKQSIERHQQQVFVACHYDYPIDRMIQQFKYEQKLQHQ
RLLSGLLLQLQLPKIHAIVPMPISTDRLAERGFNQALLLAQAISKHLNVPIWQPVQRLAQHSQKGLSRLERLENIEQQFL
AAASNQIRYRRVLIVDDVVTTGSSISALSDVLKQLGCQHIYSACVAAAQIKHTHSFVAANTTESQLL

Nucleotide


Download         Length: 684 bp        

>NTDB_id=714404 NQU59_RS05495 WP_257065289.1 1147229..1147912(-) (comF) [Acinetobacter colistiniresistens strain C-214]
ATGTTTAAACGCCTCAGGACATCCACCCAACAGTTGTTGGATTATTTCACCCCATGCAGTTTGTGTGATATTGGAATAAA
ACGGCACTTTGGCGTTTGTCAAAGCTGTTGGCAACAGCTACCGTGGTTAAAACAATCAATTGAACGGCATCAGCAACAGG
TCTTCGTTGCCTGTCATTATGACTATCCAATTGACAGGATGATTCAACAATTCAAATACGAGCAGAAACTACAGCATCAA
CGCTTATTGAGCGGGTTATTGCTGCAACTGCAACTGCCCAAGATTCATGCCATTGTGCCGATGCCCATTTCAACCGATCG
CTTAGCAGAGCGCGGCTTTAATCAAGCCCTTTTACTCGCCCAAGCCATAAGCAAACACTTGAATGTACCAATCTGGCAAC
CCGTACAACGCTTAGCCCAACACTCACAAAAAGGCTTGTCACGGTTAGAGCGACTGGAAAACATCGAACAGCAATTTCTT
GCAGCAGCATCGAATCAGATTCGTTATCGTCGCGTCCTGATTGTCGATGACGTCGTCACGACAGGTAGTTCAATCAGTGC
GTTATCTGATGTTTTAAAACAACTCGGCTGCCAACACATTTACAGTGCCTGCGTAGCAGCCGCCCAAATCAAACATACAC
ATTCATTTGTTGCTGCAAACACCACGGAATCACAACTTCTTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

63.942

91.63

0.586
  comF Acinetobacter baumannii D1279779

63.462

91.63

0.582