Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NP165_RS10925 Genome accession   NZ_CP102096
Coordinates   2338180..2338794 (+) Length   204 a.a.
NCBI ID   WP_257083994.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2333180..2343794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS10905 (NP165_10905) - 2333503..2334417 (-) 915 WP_257083990.1 ABC transporter ATP-binding protein -
  NP165_RS10910 (NP165_10910) - 2334637..2336307 (-) 1671 WP_257083991.1 SulP family inorganic anion transporter -
  NP165_RS10915 (NP165_10915) can 2336590..2337258 (+) 669 WP_257083992.1 carbonate dehydratase -
  NP165_RS10920 (NP165_10920) hpt 2337349..2337879 (-) 531 WP_257083993.1 hypoxanthine phosphoribosyltransferase -
  NP165_RS10925 (NP165_10925) opaR 2338180..2338794 (+) 615 WP_257083994.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  NP165_RS10930 (NP165_10930) lpdA 2338919..2340349 (-) 1431 WP_257083995.1 dihydrolipoyl dehydrogenase -
  NP165_RS10935 (NP165_10935) aceF 2340616..2342511 (-) 1896 WP_257083996.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23484.77 Da        Isoelectric Point: 5.8689

>NTDB_id=714356 NP165_RS10925 WP_257083994.1 2338180..2338794(+) (opaR) [Vibrio japonicus strain JCM 31412]
MDSIAKRPRTRLSPQKRKQQLMEISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNHVVRQFSNFLS
DNIDLDLHAKENLANLTSAMVELVVNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDLHDPS
DLATLFHGMCYSLFIQANRTQDPEALATLTQSYLDMLCIYKRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=714356 NP165_RS10925 WP_257083994.1 2338180..2338794(+) (opaR) [Vibrio japonicus strain JCM 31412]
ATGGACTCTATAGCTAAAAGGCCGCGTACGCGCCTGTCTCCACAAAAGAGAAAGCAGCAACTAATGGAAATTTCATTAGA
AGTGTTTGCTCGCAGAGGTATTGGCCGTGGTGGTCATGCGGATATTGCTGAAATTGCTCAAGTTTCAGTAGCAACAGTAT
TCAACTATTTCCCAACTCGCGAAGACTTAGTCGATGATGTACTCAACCACGTCGTCAGGCAGTTTTCTAACTTCCTTTCA
GACAATATCGATCTAGATCTTCACGCAAAAGAAAACCTAGCAAATCTAACATCAGCGATGGTTGAACTTGTCGTGAATGA
TTGTCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCAACGCGCGATGAAGTTTGGCCACTGTTTGTATCAACAAACC
GCACCAATCAGCTTCTGGTACAGAACATGTTCATAAAGGCCATTGAGCGTGGTGAGGTTTGTGATCTGCACGATCCATCT
GATCTTGCGACTCTGTTCCACGGCATGTGCTATTCACTGTTTATTCAGGCAAACCGTACACAAGATCCAGAAGCATTGGC
GACCCTCACCCAAAGCTACTTGGATATGCTATGCATCTATAAACGCGATCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(25-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

84.804

100

0.848
  hapR Vibrio cholerae C6706

76.382

97.549

0.745
  hapR Vibrio cholerae strain A1552

76.382

97.549

0.745