Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NP165_RS04035 Genome accession   NZ_CP102096
Coordinates   821750..823144 (+) Length   464 a.a.
NCBI ID   WP_257085037.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 816750..828144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS04015 (NP165_04015) rsxB 817475..818056 (-) 582 WP_257085034.1 electron transport complex subunit RsxB -
  NP165_RS04020 (NP165_04020) rsxA 818056..818637 (-) 582 WP_257085035.1 electron transport complex subunit RsxA -
  NP165_RS04030 (NP165_04030) uvrB 819458..821488 (+) 2031 WP_257085036.1 excinuclease ABC subunit UvrB -
  NP165_RS04035 (NP165_04035) luxO 821750..823144 (+) 1395 WP_257085037.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  NP165_RS04040 (NP165_04040) luxU 823148..823486 (+) 339 WP_257085038.1 quorum-sensing phosphorelay protein LuxU -
  NP165_RS04045 (NP165_04045) yvcK 823475..824362 (-) 888 WP_257085039.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  NP165_RS04050 (NP165_04050) moaA 824695..825684 (+) 990 WP_257085040.1 GTP 3',8-cyclase MoaA -
  NP165_RS04055 (NP165_04055) moaB 825766..826278 (+) 513 WP_257085041.1 molybdenum cofactor biosynthesis protein B -
  NP165_RS04060 (NP165_04060) moaC 826293..826772 (+) 480 WP_257085042.1 cyclic pyranopterin monophosphate synthase MoaC -
  NP165_RS04065 (NP165_04065) moaD 826769..827014 (+) 246 WP_257085043.1 molybdopterin synthase sulfur carrier subunit -
  NP165_RS04070 (NP165_04070) moaE 827017..827475 (+) 459 WP_257085044.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51600.17 Da        Isoelectric Point: 5.5888

>NTDB_id=714342 NP165_RS04035 WP_257085037.1 821750..823144(+) (luxO) [Vibrio japonicus strain JCM 31412]
MQNNIINPKAKYLLMVEDTVSVAALYRSYLTPLHIDINIVGTGREAIESLNFRTPDLILLDLRLPDMTGMDVLSAVKQKN
PDVPVVFMTAHGSIDTAVEAMRLGAQDFLIKPCEADRLRVTVNNALRKANKLKNESGTEDNQGYQGFIGSSQMMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASNRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDIIEIAYSLLGFMSKEEGKDFVRLSPEVVERFANYEWPGNVRQLQNVLRNVVVLNNGKEITLSMLPPPLNRPVESQI
RVTLVDKQEPSVQDIFPLWLTEKKAIEQAIKACDGNIPKAAGYLDVSPSTIYRKLQAWNAKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=714342 NP165_RS04035 WP_257085037.1 821750..823144(+) (luxO) [Vibrio japonicus strain JCM 31412]
ATGCAAAATAATATAATTAATCCCAAAGCAAAATATCTACTTATGGTAGAAGATACGGTATCTGTTGCAGCACTGTATCG
CTCATACCTCACACCGTTACATATCGATATAAACATAGTCGGTACCGGACGTGAGGCGATCGAAAGCTTAAATTTTCGTA
CACCGGATCTCATCTTATTGGATTTACGTCTCCCCGATATGACAGGGATGGATGTACTTTCCGCTGTAAAGCAGAAAAAT
CCAGACGTGCCTGTTGTTTTTATGACGGCACATGGCTCAATTGATACGGCTGTTGAAGCGATGCGTCTTGGCGCACAGGA
CTTTCTGATCAAGCCGTGTGAAGCGGATCGCCTTCGTGTCACCGTCAACAATGCACTTCGCAAAGCAAACAAGCTTAAAA
ACGAATCAGGCACTGAAGATAATCAAGGCTATCAGGGCTTTATCGGCAGTAGTCAGATGATGCAGGCGGTATACAGAACG
ATTGACTCTGCGGCATCAAGTAAAGCGAGTATCTTCATTACGGGTGAAAGTGGCACAGGTAAAGAAGTGTGTGCAGAAGC
CATTCATGCCGCAAGCAACCGTGGCGACAAGCCGTTTATTGCGATTAACTGTGCCGCGATTCCTAAAGACCTGATTGAAA
GTGAGCTGTTTGGCCATGTGAAGGGCGCGTTTACGGGAGCCGCGACGGATAGGCAAGGGGCGGCAGAGCTTGCCGATGGC
GGGACGTTGTTTCTCGATGAACTTTGCGAGATGGACCTAGATTTGCAAACTAAACTGTTGCGATTTATTCAAACAGGTAC
GTTTCAAAAGGTCGGTTCTTCAAAAATGAAAAGTGTTGACGTGAGGTTTGTTTGCGCGACCAACCGCGATCCGTGGAAAG
AAGTGCAAGAGGGGAGATTTAGGGAAGATTTATATTATCGCCTTTATGTTATCCCCTTACATTTGCCACCTTTACGTGAG
CGTGGTGATGATATTATCGAAATCGCATACTCACTTTTGGGCTTTATGTCGAAAGAAGAGGGAAAAGACTTTGTTCGTTT
GTCCCCAGAAGTGGTAGAACGTTTTGCTAATTATGAGTGGCCAGGTAACGTGCGACAACTACAAAATGTGCTTCGAAATG
TGGTTGTCCTCAATAATGGTAAAGAGATTACGTTAAGCATGTTACCACCGCCTTTAAATCGCCCGGTCGAGAGCCAGATT
AGAGTGACATTGGTGGATAAACAAGAGCCCTCTGTCCAAGATATTTTCCCGCTCTGGTTGACCGAAAAGAAAGCGATAGA
GCAGGCGATAAAAGCATGTGATGGTAATATCCCTAAAGCCGCTGGATATTTAGATGTAAGCCCATCAACTATCTATAGAA
AGTTACAAGCGTGGAATGCTAAGGAAACCCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

96.552

0.838
  pilR Pseudomonas aeruginosa PAK

39.686

96.121

0.381