Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   NQZ84_RS08230 Genome accession   NZ_CP102094
Coordinates   1680020..1680709 (-) Length   229 a.a.
NCBI ID   WP_002942700.1    Uniprot ID   A0A126UNE5
Organism   Streptococcus suis strain 12RC1     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1675020..1685709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS08210 (NQZ84_08210) - 1675805..1676956 (-) 1152 WP_029178957.1 replication initiation/membrane attachment protein -
  NQZ84_RS08215 (NQZ84_08215) nrdR 1676943..1677434 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  NQZ84_RS08220 (NQZ84_08220) - 1677506..1678636 (-) 1131 WP_012027644.1 AI-2E family transporter -
  NQZ84_RS08225 (NQZ84_08225) - 1678853..1679377 (-) 525 WP_024408246.1 hypothetical protein -
  NQZ84_RS08230 (NQZ84_08230) covR 1680020..1680709 (-) 690 WP_002942700.1 response regulator transcription factor Regulator
  NQZ84_RS08235 (NQZ84_08235) gndA 1680791..1682218 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  NQZ84_RS08240 (NQZ84_08240) - 1682315..1682854 (-) 540 WP_014638519.1 YceD family protein -
  NQZ84_RS08245 (NQZ84_08245) trxB 1682864..1683781 (-) 918 WP_257047897.1 thioredoxin-disulfide reductase -
  NQZ84_RS08250 (NQZ84_08250) - 1683795..1684019 (-) 225 WP_014638521.1 DUF4059 family protein -
  NQZ84_RS08255 (NQZ84_08255) - 1684037..1685380 (-) 1344 WP_257047901.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26225.11 Da        Isoelectric Point: 5.3968

>NTDB_id=714316 NQZ84_RS08230 WP_002942700.1 1680020..1680709(-) (covR) [Streptococcus suis strain 12RC1]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=714316 NQZ84_RS08230 WP_002942700.1 1680020..1680709(-) (covR) [Streptococcus suis strain 12RC1]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTGCAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGAGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTCGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UNE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432