Detailed information NTG0714252

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NL417_RS22115
• Genome accession: NZ_CP116916
• Coordinates: 4382158..4383183 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain MLI023K2
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4377158..4388183

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NL417_RS22100 (NL417_022085)	rhsC	4377727..4379229 (-)	1503	Protein_4171	rhs element protein RhsC	-
NL417_RS22105 (NL417_022090)	rpmE	4379389..4379601 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NL417_RS22110 (NL417_022095)	priA	4379804..4382002 (+)	2199	WP_001295520.1	primosomal protein N'	Machinery gene
NL417_RS22115 (NL417_022100)	cytR	4382158..4383183 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NL417_RS22120 (NL417_022105)	ftsN	4383275..4384234 (+)	960	WP_071598226.1	cell division protein FtsN	-
NL417_RS22125 (NL417_022110)	hslV	4384327..4384857 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NL417_RS22130 (NL417_022115)	hslU	4384867..4386198 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NL417_RS22135 (NL417_022120)	menA	4386265..4387191 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NL417_RS22140 (NL417_022125)	rraA	4387284..4387769 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NL417_RS22145 (NL417_022130)	zapB	4387854..4388099 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=714252 NL417_RS22115 WP_000644904.1 4382158..4383183(+) (cytR) [Escherichia coli strain MLI023K2]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=714252 NL417_RS22115 WP_000644904.1 4382158..4383183(+) (cytR) [Escherichia coli strain MLI023K2]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCAGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628