Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NF392_RS03910 Genome accession   NZ_CP102089
Coordinates   841516..841911 (+) Length   131 a.a.
NCBI ID   WP_023351359.1    Uniprot ID   A0A7X9WCS4
Organism   Staphylococcus capitis subsp. capitis strain H17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 836516..846911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF392_RS03880 atpD 836734..838146 (+) 1413 WP_002435865.1 F0F1 ATP synthase subunit beta -
  NF392_RS03885 - 838166..838570 (+) 405 WP_002435826.1 F0F1 ATP synthase subunit epsilon -
  NF392_RS03890 - 838711..838944 (+) 234 WP_002453705.1 DUF1146 family protein -
  NF392_RS03895 murA 839054..840319 (+) 1266 WP_002435807.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NF392_RS03900 fabZ 840364..840801 (+) 438 WP_023351358.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NF392_RS03905 - 840882..841325 (-) 444 WP_002435823.1 YwpF-like family protein -
  NF392_RS03910 ssb 841516..841911 (+) 396 WP_023351359.1 single-stranded DNA-binding protein Machinery gene
  NF392_RS03915 - 842305..843030 (+) 726 WP_023351360.1 transglycosylase family protein -
  NF392_RS03920 tenA 843326..844015 (+) 690 WP_002435801.1 thiaminase II -
  NF392_RS03925 thiD 844008..844829 (+) 822 WP_002435497.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NF392_RS03930 thiM 844822..845610 (+) 789 WP_023351361.1 hydroxyethylthiazole kinase -
  NF392_RS03935 thiE 845617..846255 (+) 639 WP_023351362.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15172.04 Da        Isoelectric Point: 5.2691

>NTDB_id=714249 NF392_RS03910 WP_023351359.1 841516..841911(+) (ssb) [Staphylococcus capitis subsp. capitis strain H17]
MLNKIVIVGRLTKDAQIYEKEDNKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=714249 NF392_RS03910 WP_023351359.1 841516..841911(+) (ssb) [Staphylococcus capitis subsp. capitis strain H17]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAAGATAATAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WCS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

76.336

100

0.763
  ssb Staphylococcus aureus MW2

75.573

100

0.756