Detailed information NTG0714242

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: NF392_RS00175
• Genome accession: NZ_CP102089
• Coordinates: 36458..38089 (-)
• Length: 543 a.a.
• NCBI ID: WP_031870519.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. capitis strain H17
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	36754..39447	36458..38089	flank	-1335

Gene organization within MGE regions

Location: 36458..39447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF392_RS00175	ccrB	36458..38089 (-)	1632	WP_031870519.1	cassette chromosome recombinase CcrB	Machinery gene
NF392_RS00180	ccrA	38086..39447 (-)	1362	WP_057504845.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 543 a.a.
• Molecular weight: 62570.83 Da
• Isoelectric Point: 9.6686

>NTDB_id=714242 NF392_RS00175 WP_031870519.1 36458..38089(-) (ccrB) [Staphylococcus capitis subsp. capitis strain H17]
MTQLKKKRIGLYARVSTEIQTNGYSIQSQLNQLKEYCQFQGYEVVDEYTDRGISGKTTQRPELQRILKDANDGKLDCIMV
YKTNRLARNTSDLLTIVEELYKINVEFFSLTEKIEIASSTGKLMLQILASFSEFERNTIVENVYNGQRQRAIEGYYQGNL
PLGYDKVPDSKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAKY
RHWSDKRRKGLNEEPIIADGKHAPIIDKALWDKVQFKRQESRKKPQVHGKGTNLLTGIVKCPSPKCGAAMAASNTTNTLK
DGTKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQILEIIKSKKVLKQLVEKVNERSQIDVSSLNHDIAYKQSQC
EELKIKMHTLTKTIEDSPDLDSILKPTILNYQDELNQINNQIHQLEQDKQAEAPHYDADMIANILQTIFKDIDKLEKSQL
KSLYLTVIDRIDIRKDEHHKKQFYVTLKLNNEIIKQLFNNHPLDEVLLSTSSLFLPQTLYLTI

Nucleotide

• Length: 1632 bp

>NTDB_id=714242 NF392_RS00175 WP_031870519.1 36458..38089(-) (ccrB) [Staphylococcus capitis subsp. capitis strain H17]
ATGACACAACTCAAAAAGAAACGTATTGGATTATATGCCCGTGTATCGACTGAAATCCAGACGAACGGCTACAGCATTCA
AAGCCAGTTAAATCAACTTAAAGAGTATTGTCAATTTCAAGGATATGAAGTCGTTGATGAATATACCGATCGAGGTATAT
CGGGTAAAACCACGCAACGTCCTGAACTACAACGTATATTAAAAGATGCAAACGACGGTAAGTTAGATTGTATTATGGTC
TACAAAACCAATCGTTTAGCTAGAAATACCTCAGATTTATTAACTATTGTCGAAGAATTATATAAGATTAATGTCGAATT
TTTTAGTCTAACTGAAAAAATAGAAATTGCCAGCTCAACTGGTAAATTAATGCTCCAAATCTTAGCTAGCTTCTCTGAAT
TTGAAAGAAATACAATTGTAGAAAATGTCTACAATGGCCAAAGACAACGTGCTATTGAAGGTTATTACCAAGGTAATTTA
CCTCTAGGCTATGATAAAGTGCCTGATAGTAAAAAAGAACTGATGATTAATCAACATGAAGCAAATATTGTTAAATATAT
TTTTGAGTCATACGCCAAAGGGCACGGTTATCGTAAAATTGCGAATGCATTAAATCACAAAGGTTACGTGACTAAGAAAG
GGAAACCGTTTAGTATTTCATCCATTACCTATATCATCTCAAACCCTTTTTATATTGGAAAGATACAGTTTGCGAAGTAT
AGACACTGGAGCGATAAGAGACGAAAAGGACTCAATGAAGAACCGATTATTGCGGATGGTAAGCATGCGCCTATTATTGA
TAAAGCCTTATGGGATAAAGTACAGTTTAAACGCCAAGAGAGTCGTAAGAAACCACAAGTTCATGGTAAAGGGACCAATC
TACTGACTGGGATTGTAAAATGTCCGAGTCCGAAATGTGGCGCAGCAATGGCCGCAAGTAATACAACTAATACTTTAAAA
GATGGCACTAAGAAACGAATCAGATATTACTCATGTAGTAATTTTAGAAACAAAGGTTCTAAAGTATGTAGTGCTAATTC
TGTTAGAGCAGATGTATTGGAAAAATATGTTATGGATCAAATATTGGAGATTATCAAAAGTAAAAAGGTATTGAAACAAT
TGGTTGAAAAAGTAAATGAAAGAAGTCAAATAGACGTCTCTTCTTTGAATCATGATATTGCCTATAAACAGTCACAATGT
GAAGAACTAAAAATCAAAATGCATACACTAACGAAAACGATTGAAGACTCACCTGACTTAGATAGTATATTAAAACCAAC
AATACTTAACTATCAAGATGAATTGAATCAAATAAATAATCAAATACATCAACTAGAACAAGATAAACAAGCGGAAGCTC
CACATTATGATGCTGATATGATTGCCAACATACTACAAACAATATTCAAAGATATAGACAAATTAGAGAAATCTCAATTG
AAATCACTATATCTAACAGTCATCGATCGCATTGACATCAGAAAAGATGAGCATCATAAGAAGCAATTTTATGTTACGCT
TAAACTGAATAATGAAATTATCAAACAACTATTTAATAACCATCCACTCGACGAAGTGCTCCTTAGCACTTCGTCTTTAT
TTTTGCCACAAACACTGTACCTTACTATTTAA

Domains

Predicted by InterproScan.

• Ogr/Delta-like zinc finger (Ogr_Delta) (304-357)

• Recombinase (Recombinase) (179-280)

• Resolvase, N terminal domain (Resolvase) (11-154)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	73.346	100	0.735