Detailed information NTG0714243

Bioinformatically predicted

Overview

• Name: ccrA
• Type: Machinery gene
• Locus tag: NF392_RS00180
• Genome accession: NZ_CP102089
• Coordinates: 38086..39447 (-)
• Length: 453 a.a.
• NCBI ID: WP_057504845.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. capitis strain H17
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	36754..39447	38086..39447	within	0

Gene organization within MGE regions

Location: 36754..39447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF392_RS00180	ccrA	38086..39447 (-)	1362	WP_057504845.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 53205.31 Da
• Isoelectric Point: 9.8623

>NTDB_id=714243 NF392_RS00180 WP_057504845.1 38086..39447(-) (ccrA) [Staphylococcus capitis subsp. capitis strain H17]
MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSHVTFYDDKKTGRHTKRSGYQKMVEMITSGKCKVLCCYRLNRLHRN
LKNAIQFFEICKKHQVTIISVNDGYFDLSKEFDRFRLNILMSLAEMESNNISEQTRNGIREKAKQGKLITTHAPFGYRYK
QGHFVVHEEEAYTVKVVYCWYLQGLGYKKISQHLDNNPKLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT
FEEAQERRIHKQHNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNEAYHTCPFKGINAQMIETEILST
CKAYCDNQSFHDKLNKTVLKALKHQQIKHKETHLTQAQLIEKLAQNRIDVKTFKRLSASCKSEENYPTYSTYQIDDKLKY
VIKNKITLQDIAPLIDEITITQTKQLQGIYFKNTPLNIVEQSHLITPERNEVI

Nucleotide

• Length: 1362 bp

>NTDB_id=714243 NF392_RS00180 WP_057504845.1 38086..39447(-) (ccrA) [Staphylococcus capitis subsp. capitis strain H17]
ATGGAAGAAGCCATTGCTTACGTACGTCAAAGTACATTAAAACAACAAAGCTTAGCGACACAGAAATCACTTATTATGGA
TACTGCTAAACAATATGGATGGTCTCATGTGACGTTTTATGATGATAAAAAAACAGGTCGACATACAAAACGTTCGGGCT
ATCAAAAAATGGTAGAAATGATTACATCTGGAAAATGTAAAGTATTATGTTGTTATCGTCTGAATCGACTTCATCGTAAT
TTGAAAAACGCTATACAATTCTTTGAAATTTGTAAAAAGCATCAAGTCACAATCATCAGCGTGAATGATGGCTATTTTGA
CTTATCTAAAGAATTTGATCGCTTTCGCCTAAACATACTTATGAGTCTAGCTGAAATGGAGTCTAATAATATCAGTGAAC
AGACACGAAATGGGATAAGAGAAAAAGCCAAACAAGGTAAGCTAATCACAACTCATGCTCCGTTTGGTTATCGTTACAAA
CAAGGTCATTTTGTTGTACATGAAGAAGAAGCGTATACAGTCAAAGTGGTCTATTGCTGGTACTTACAAGGGCTAGGCTA
CAAAAAAATTTCCCAACATTTAGATAACAACCCTAAGCTTATTCCACGTAAGCCCTATCAAGTTAGAAATATTCTCTTGA
ACCCTAATTATTGTGGTCGTGTCATTAATAAATATGGAACATTTAATGATATCGTTCCACCTATTATTGATATTGATACG
TTTGAAGAAGCACAAGAGCGTCGTATTCATAAACAACACAATCGATCCAATTCTAGAAATAAGTTAAAGCGACGAATCAA
ATGTCCTTACTGTCAATCAACATTAACAAACTTAACGATAAAAAAAGAAAATTACTCTCTACGTTACTACGTTTGTCCTA
AGAATATGAATGAAGCTTATCATACGTGTCCATTTAAAGGTATCAATGCACAAATGATTGAAACAGAGATCCTCAGCACT
TGTAAAGCGTATTGTGACAATCAATCATTTCATGACAAATTAAATAAGACAGTACTAAAAGCTCTAAAACACCAACAAAT
AAAGCATAAAGAAACCCATCTAACACAAGCACAATTGATTGAAAAGCTAGCTCAAAATCGTATTGATGTAAAAACGTTCA
AACGTTTATCTGCTAGTTGTAAAAGTGAAGAGAATTATCCTACTTATTCAACCTACCAAATCGATGACAAATTAAAATAT
GTCATAAAAAATAAAATAACTTTACAGGACATAGCACCTTTGATTGATGAAATTACAATAACTCAAACTAAACAATTACA
AGGAATCTACTTTAAAAATACTCCACTCAATATCGTTGAACAATCACATTTAATAACTCCTGAAAGGAATGAAGTCATAT
GA

Domains

Predicted by InterproScan.

• Resolvase, N terminal domain (Resolvase) (4-147)

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (262-321)

• Recombinase (Recombinase) (168-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrA	Staphylococcus aureus COL	54.853	97.792	0.536
ccrA	Staphylococcus aureus N315	51.242	97.792	0.501