Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NF398_RS08145 Genome accession   NZ_CP102087
Coordinates   1661730..1662125 (-) Length   131 a.a.
NCBI ID   WP_023351359.1    Uniprot ID   A0A7X9WCS4
Organism   Staphylococcus capitis subsp. capitis strain K1-2-2-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1656730..1667125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF398_RS08120 thiE 1657385..1658023 (-) 639 WP_023351362.1 thiamine phosphate synthase -
  NF398_RS08125 thiM 1658030..1658818 (-) 789 WP_023351361.1 hydroxyethylthiazole kinase -
  NF398_RS08130 thiD 1658811..1659632 (-) 822 WP_002435497.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NF398_RS08135 tenA 1659625..1660314 (-) 690 WP_002435801.1 thiaminase II -
  NF398_RS08140 - 1660610..1661335 (-) 726 WP_023351360.1 transglycosylase family protein -
  NF398_RS08145 ssb 1661730..1662125 (-) 396 WP_023351359.1 single-stranded DNA-binding protein Machinery gene
  NF398_RS08150 - 1662316..1662759 (+) 444 WP_002435823.1 YwpF-like family protein -
  NF398_RS08155 fabZ 1662840..1663277 (-) 438 WP_023351358.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NF398_RS08160 murA 1663322..1664587 (-) 1266 WP_002435807.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NF398_RS08165 - 1664697..1664930 (-) 234 WP_002453705.1 DUF1146 family protein -
  NF398_RS08170 - 1665071..1665475 (-) 405 WP_002435826.1 F0F1 ATP synthase subunit epsilon -
  NF398_RS08175 atpD 1665495..1666907 (-) 1413 WP_002435865.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15172.04 Da        Isoelectric Point: 5.2691

>NTDB_id=714232 NF398_RS08145 WP_023351359.1 1661730..1662125(-) (ssb) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]
MLNKIVIVGRLTKDAQIYEKEDNKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=714232 NF398_RS08145 WP_023351359.1 1661730..1662125(-) (ssb) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAAGATAATAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WCS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

76.336

100

0.763
  ssb Staphylococcus aureus MW2

75.573

100

0.756